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Table 3 Consistency test of PhySpe Tree comparied with the updated tree of life [33]

From: PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees

  1. a SSU rRNA sequences were retrieved by PhySpeTree, aligned by SINA, and tree reconsturction by RAxML (GTRCAT model). b HCP sequences were retrieved by PhySpTree, aligned by MUSCLE, and tree reconstruction by RAxML (PROTGAMMAJTTX model). c Normalized Robinson-Foulds (nRF) distance was calculated by ETE3 [10]
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BMC Ecology and Evolution

ISSN: 2730-7182

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