Fig. 2
The effect of genetic linkage to selectively targeted loci on FST. a FST calculated according to the distance from each nucleotide in the assembly to the nearest outlier of genetic differentiation. The left-most point corresponds to FST from the outliers. The solid red curve is fitted by smooth-spline with degree of freedom = 4, and the red dotted curves are 95% confidence intervals with 1000 bootstrapping. The vertical dotted line indicates the distance equal to 200 kb. b The barplot shows FST from the scaffolds with outliers and without outliers. The error bars indicate 95% bootstrapping confidence intervals calculated from the resampling from 100 kb windows with 1000 replications