Evolutionary history of two cryptic species of northern African jerboas

Moutinho, Ana Filipa; Serén, Nina; Paupério, Joana; Silva, Teresa Luísa; Martínez-Freiría, Fernando; Sotelo, Graciela; Faria, Rui; Mappes, Tapio; Alves, Paulo Célio; Brito, José Carlos; Boratyński, Zbyszek

doi:10.1186/s12862-020-1592-z

BMC Ecology and Evolution

Table 2 Diversity estimates within Jaculus species

From: Evolutionary history of two cryptic species of northern African jerboas

Locus	Species	L	n	S	H	Hd(SD)	π (SD)%	θ_W (SD)%	D	F_S	R₂
Cytb	J. jaculus	897	96	156	87	0.997 (0.002)	1.61 (0.09)	3.39 (0.86)	−1.84^**	−89.13^***	0.04^**
Cytb	J. hirtipes	897	137	102	83	0.980 (0.005)	0.58 (0.03)	2.07 (0.51)	−2.35^***	− 107.96^***	0.02^***
DBX5	J. jaculus	311	84	3	4	0.220 (0.059)	0.09 (0.03)	0.20 (0.10)	−1.02	−1.96	0.04
DBX5	J. hirtipes	306	180	7	8	0.208 (0.040)	0.07 (0.01)	0.40 (0.20)	−1.77^*	−8.94^***	0.02
DBX5 non-rec	J. jaculus	301	84	2	3	0.217 (0.057)	0.07 (0.02)	0.10 (0.10)	−0.71	−0.95	0.06
DBX5 non-rec	J. hirtipes	296	171	6	7	0.166 (0.038)	0.06 (0.01)	0.40 (0.20)	−1.73	−8.21^***	0.02
ADRA2B	J. jaculus	693	72	7	9	0.705 (0.031)	0.30 (0.02)	0.20 (0.20)	0.32	−0.87	0.13
ADRA2B	J. hirtipes	693	180	11	11	0.345 (0.045)	0.06 (0.01)	0.30 (0.10)	−1.85^*	−9.67^*	0.02
GHR	J. jaculus	798	80	10	11	0.378 (0.070)	0.05 (0.01)	0.20 (0.10)	−2.09^*	−12.09^**	0.03^*
GHR	J. hirtipes	798	183	11	10	0.147 (0.036)	0.03 (0.008)	0.20 (0.09)	−2.12^*	−12.93^***	0.02^*
IRBP	J. jaculus	1058	50	25	19	0.905 (0.023)	0.35 (0.05)	0.53 (0.20)	−1.07	−6.48	0.07^*
IRBP	J. hirtipes	1058	106	23	35	0.948 (0.010)	0.39 (0.002)	0.41 (0.13)	−0.19	−19.37	0.09
ʋWF	J. jaculus	873	40	31	23	0.938 (0.026)	0.57 (0.07)	0.83 (0.28)	−1.11	−10.77	0.08^*
ʋWF	J. hirtipes	874	132	33	37	0.933 (0.012)	0.56 (0.02)	0.69 (0.20)	−0.70	−15.72	0.07
ʋWF non-rec	J. jaculus	516	26	6	6	0.717 (0.079)	0.38 (0.05)	0.30 (0.15)	0.76	0.14	0.16
ʋWF non-rec	J. hirtipes	514	127	18	14	0.861 (0.016)	0.44 (0.27)	0.65 (0.21)	−0.89	−2.48	0.06
Agouti	J. jaculus	453	66	14	12	0.746 (0.037)	0.39 (0.05)	0.65 (0.24)	−0.06	− 0.06^*	0.10^***
Agouti	J. hirtipes	461	162	14	15	0.765 (0.021)	1.07 (0.02)	0.54 (0.18)	−0.09^*	−0.36	0.08^***
MC1R	J. jaculus	894	56	9	11	0.890 (0.016)	0.19 (0.01)	0.22 (0.09)	−0.06	−0.08	0.11
MC1R	J. hirtipes	894	110	13	19	0.890 (0.019)	0.25 (0.02)	0.28 (0.10)	−0.06	−0.21^*	0.09

In loci with significant levels of within-locus recombination, values are shown for the recombinant and non-recombinant datasets (denoted as “non-rec’”)
L number of sites excluding gaps, n number of sequences, S number of segregating sites, H number of haplotypes, Hd haplotype diversity, π nucleotide diversity per site, θ_W computed from the number of segregating sites, D Tajima’s D, F_S Fu’s F_S, R₂ Ramos-Onsins & Rozas’s R₂
Significant values indicated ^*(P < 0.05), ^**(P < 0.01), ^***(P < 0.001)

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