Skip to content

Advertisement

Genome evolution and evolutionary systems biology

Section edited by Maria Anisimova, Arndt von Haeseler and David Liberles

This section considers studies on genome evolution and systems biology approaches to determining evolutionary processes.

Page 2 of 19
  1. Content type: Research article

    Exaggerated signals, such as brilliant colours, are usually assumed to evolve through antagonistic coevolution between senders and receivers, but the underlying genetic mechanisms are rarely known. Here we exp...

    Authors: Hanlu Twyman, Staffan Andersson and Nicholas I. Mundy

    Citation: BMC Evolutionary Biology 2018 18:22

    Published on:

  2. Content type: Research article

    Due to the DNA triplet code, it is possible that the sequences of two or more protein-coding genes overlap to a large degree. However, such non-trivial overlaps are usually excluded by genome annotation pipeli...

    Authors: Sarah M. Hücker, Sonja Vanderhaeghen, Isabel Abellan-Schneyder, Romy Wecko, Svenja Simon, Siegfried Scherer and Klaus Neuhaus

    Citation: BMC Evolutionary Biology 2018 18:21

    Published on:

  3. Content type: Methodology article

    The nonparametric bootstrap is widely used to measure the branch support of phylogenetic trees. However, bootstrapping is computationally expensive and remains a bottleneck in phylogenetic analyses. Recently, ...

    Authors: Diep Thi Hoang, Le Sy Vinh, Tomáš Flouri, Alexandros Stamatakis, Arndt von Haeseler and Bui Quang Minh

    Citation: BMC Evolutionary Biology 2018 18:11

    Published on:

  4. Content type: Research article

    Universal stress proteins (USPs) are present in all domains of life. Their expression is upregulated in response to a large variety of stress conditions. The functional diversity found in this protein family, ...

    Authors: Sergio Martin Espinola, Martin Pablo Cancela, Lauís Brisolara Corrêa and Arnaldo Zaha

    Citation: BMC Evolutionary Biology 2018 18:10

    Published on:

  5. Content type: Research article

    Population genetics theory predicts an important role of differences in the effective population size (N e ) among species on shaping the accumulation of functional mutations...

    Authors: Jianhai Chen, Pan Ni, Xinyun Li, Jianlin Han, Ivan Jakovlić, Chengjun Zhang and Shuhong Zhao

    Citation: BMC Evolutionary Biology 2018 18:4

    Published on:

  6. Content type: Research article

    Maleness in mammals is genetically determined by the Y chromosome. On the Y chromosome SRY is known as the mammalian male-determining gene. Both placental mammals (Eutheria) and marsupial mammals (Metatheria) hav...

    Authors: Yukako Katsura, Hiroko X. Kondo, Janelle Ryan, Vincent Harley and Yoko Satta

    Citation: BMC Evolutionary Biology 2018 18:3

    Published on:

  7. Content type: Research article

    Neo-sex chromosome systems arose independently multiple times in evolution, presenting the remarkable characteristic of repetitive DNAs accumulation. Among grasshoppers, occurrence of neo-XY was repeatedly not...

    Authors: Octavio M. Palacios-Gimenez, Diogo Milani, Bernardo Lemos, Elio R. Castillo, Dardo A. Martí, Erica Ramos, Cesar Martins and Diogo C. Cabral-de-Mello

    Citation: BMC Evolutionary Biology 2018 18:2

    Published on:

  8. Content type: Research article

    The primary energy-producing pathway in eukaryotic cells, the oxidative phosphorylation (OXPHOS) system, comprises proteins encoded by both mitochondrial and nuclear genes. To maintain the function of the OXPH...

    Authors: Yiyuan Li, Rui Zhang, Shanlin Liu, Alexander Donath, Ralph S. Peters, Jessica Ware, Bernhard Misof, Oliver Niehuis, Michael E. Pfrender and Xin Zhou

    Citation: BMC Evolutionary Biology 2017 17:269

    Published on:

  9. Content type: Research Article

    The Na,K-ATPase is a vital animal cell-membrane protein that maintains the cell’s resting potential, among other functions. Cardenolides, a group of potent plant toxins, bind to and inhibit this pump. The gene...

    Authors: Jennifer N. Lohr, Fee Meinzer, Safaa Dalla, Renja Romey-Glüsing and Susanne Dobler

    Citation: BMC Evolutionary Biology 2017 17:256

    Published on:

  10. Content type: Research Article

    Genes encoding proteins underlying host-pathogen co-evolution and which are selected for new resistance specificities frequently are under positive selection, a process that maintains diversity. Here, we teste...

    Authors: Mariana Mondragón-Palomino, Remco Stam, Ajay John-Arputharaj and Thomas Dresselhaus

    Citation: BMC Evolutionary Biology 2017 17:255

    Published on:

  11. Content type: Research article

    Morphological divergences of snake retinal structure point to complex evolutionary processes and adaptations. The Colubridae family has a remarkable variety of retinal structure that can range from all-cone an...

    Authors: E. Hauzman, D. M. O. Bonci, E. Y. Suárez-Villota, M. Neitz and D. F. Ventura

    Citation: BMC Evolutionary Biology 2017 17:249

    Published on:

  12. Content type: Research article

    Ancient Di-Qiang people once resided in the Ganqing region of China, adjacent to the Central Plain area from where Han Chinese originated. While gene flow between the Di-Qiang and Han Chinese has been proposed...

    Authors: Jiawei Li, Wen Zeng, Ye Zhang, Albert Min-Shan Ko, Chunxiang Li, Hong Zhu, Qiaomei Fu and Hui Zhou

    Citation: BMC Evolutionary Biology 2017 17:239

    Published on:

  13. Content type: Research article

    The presence of non-coding introns is a characteristic feature of most eukaryotic genes. While the size of the introns, number of introns per gene and the number of intron-containing genes can vary greatly bet...

    Authors: Rajiv K. Parvathaneni, Victoria L. DeLeo, John J. Spiekerman, Debkanta Chakraborty and Katrien M. Devos

    Citation: BMC Evolutionary Biology 2017 17:238

    Published on:

  14. Content type: Research article

    An important feature of eukaryotic evolution is metabolic compartmentalization, in which certain pathways are restricted to the cytosol or specific organelles. Glycolysis in eukaryotes is described as a cytoso...

    Authors: Melania Abrahamian, Meenakshi Kagda, Audrey M. V. Ah-Fong and Howard S. Judelson

    Citation: BMC Evolutionary Biology 2017 17:241

    Published on:

  15. Content type: Research article

    The Cas4 family endonuclease is a component of the adaptation module in many variants of CRISPR-Cas adaptive immunity systems. Unlike most of the other Cas proteins, Cas4 is often encoded outside CRISPR-cas loci ...

    Authors: Sanjarbek Hudaiberdiev, Sergey Shmakov, Yuri I. Wolf, Michael P. Terns, Kira S. Makarova and Eugene V. Koonin

    Citation: BMC Evolutionary Biology 2017 17:232

    Published on:

  16. Content type: Research article

    Siglecs-11 and -16 are members of the sialic acid recognizing Ig-like lectin family, and expressed in same cells. Siglec-11 functions as an inhibitory receptor, whereas Siglec-16 exhibits activating properties...

    Authors: Toshiyuki Hayakawa, Zahra Khedri, Flavio Schwarz, Corinna Landig, Suh-Yuen Liang, Hai Yu, Xi Chen, Naoko T. Fujito, Yoko Satta, Ajit Varki and Takashi Angata

    Citation: BMC Evolutionary Biology 2017 17:228

    Published on:

  17. Content type: Research article

    Organisms living at high altitudes face low oxygen and temperature conditions; thus, the genetic mechanisms underlying the adaptations in these organisms merit investigation. The glyptosternoid fish, Creteuchilog...

    Authors: Jingliang Kang, Xiuhui Ma and Shunping He

    Citation: BMC Evolutionary Biology 2017 17:229

    Published on:

  18. Content type: Research article

    Grass powdery mildew (Blumeria graminis, Ascomycota) is a major pathogen of cereal crops and has become a model organism for obligate biotrophic fungal pathogens of plants. The sequenced genomes of two formae spe...

    Authors: Fabrizio Menardo, Coraline R. Praz, Thomas Wicker and Beat Keller

    Citation: BMC Evolutionary Biology 2017 17:223

    Published on:

  19. Content type: Research article

    Small non-coding RNAs, including miRNAs, and gene silencing mediated by RNA interference have been described in free-living and parasitic lineages of flatworms, but only few key factors of the small RNA pathwa...

    Authors: Santiago Fontenla, Gabriel Rinaldi, Pablo Smircich and Jose F. Tort

    Citation: BMC Evolutionary Biology 2017 17:215

    Published on:

Page 2 of 19

2016 Journal Metrics

  • Citation Impact
    3.221 - 2-year Impact Factor
    3.628 - 5-year Impact Factor
    1.266 - Source Normalized Impact per Paper (SNIP)
    1.806 - SCImago Journal Rank (SJR)

    Usage 
    1483,328 downloads
    1015.5 Usage Factor


    Social Media Impact
    583 mentions

Portable peer review

The editors of BMC Evolutionary Biology support initiatives that expedite the peer review process and are happy to consider manuscripts that have been reviewed in Peerage of Science. Please indicate in your cover letter if this applies to your manuscript.

Space creator

Advertisement