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BMC Evolutionary Biology

Genome evolution and evolutionary systems biology

Section edited by Maria Anisimova, Arndt von Haeseler and David Liberles

This section considers studies on genome evolution and systems biology approaches to determining evolutionary processes.

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  1. Content type: Research article

    In mouse ES cells, the function of Sox2 is essential for the maintenance of pluripotency. Since the Sox-family of transcription factors are well conserved in the animal kingdom, addressing the evolutionary ori...

    Authors: Hitoshi Niwa, Akira Nakamura, Makoto Urata, Maki Shirae-Kurabayashi, Shigehiro Kuraku, Steven Russell and Satoshi Ohtsuka

    Citation: BMC Evolutionary Biology 2016 16:173

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  2. Content type: Research article

    Transitions from marine to intertidal and terrestrial habitats resulted in a significant adaptive radiation within the Panpulmonata (Gastropoda: Heterobranchia). This clade comprises several groups that invade...

    Authors: Pedro E. Romero, Alexander M. Weigand and Markus Pfenninger

    Citation: BMC Evolutionary Biology 2016 16:164

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  3. Content type: Research Article

    The development of multicellular organisms is coordinated by various gene regulatory mechanisms that ensure correct spatio-temporal patterns of gene expression. Recently, the role of antisense transcription in...

    Authors: Christian Rödelsperger, Kevin Menden, Vahan Serobyan, Hanh Witte and Praveen Baskaran

    Citation: BMC Evolutionary Biology 2016 16:165

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  4. Content type: Research article

    Predicting adaptive trajectories is a major goal of evolutionary biology and useful for practical applications. Systems biology has enabled the development of genome-scale metabolic models. However, analysing ...

    Authors: Tobias Großkopf, Jessika Consuegra, Joël Gaffé, John C. Willison, Richard E. Lenski, Orkun S. Soyer and Dominique Schneider

    Citation: BMC Evolutionary Biology 2016 16:163

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  5. Content type: Research article

    A multiscale network of two galectins Galectin-1 (Gal-1) and Galectin-8 (Gal-8) patterns the avian limb skeleton. Among vertebrates with paired appendages, chondrichthyan fins typically have one or more cartil...

    Authors: Ramray Bhat, Mahul Chakraborty, Tilmann Glimm, Thomas A. Stewart and Stuart A. Newman

    Citation: BMC Evolutionary Biology 2016 16:162

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  6. Content type: Research article

    A deeply rooted phylogenetic lineage of Mycobacterium tuberculosis (M. tuberculosis) termed lineage 7 was discovered in Ethiopia. Whole genome sequencing of 30 lineage 7 strains from patients in Ethiopia was perf...

    Authors: Solomon A. Yimer, Amine Namouchi, Ephrem Debebe Zegeye, Carol Holm-Hansen, Gunnstein Norheim, Markos Abebe, Abraham Aseffa and Tone Tønjum

    Citation: BMC Evolutionary Biology 2016 16:146

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  7. Content type: Research article

    RLSB, an S-1 domain RNA binding protein of Arabidopsis, selectively binds rbcL mRNA and co-localizes with Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) within chloroplasts of C3 and C4 plants. Previou...

    Authors: Pradeep Yerramsetty, Matt Stata, Rebecca Siford, Tammy L. Sage, Rowan F. Sage, Gane Ka-Shu Wong, Victor A. Albert and James O. Berry

    Citation: BMC Evolutionary Biology 2016 16:141

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  8. Content type: Research article

    The major histocompatibility complex (MHC) plays a crucial role in the adaptive immune system and has been extensively studied across vertebrate taxa. Although the function of MHC genes appears to be conserved...

    Authors: Shandiya Balasubramaniam, Rebecca D. Bray, Raoul A. Mulder, Paul Sunnucks, Alexandra Pavlova and Jane Melville

    Citation: BMC Evolutionary Biology 2016 16:112

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  9. Content type: Research article

    Arthropods have received much attention as a model for studying opsin evolution in invertebrates. Yet, relatively few studies have investigated the diversity of opsin proteins that underlie spectral sensitivit...

    Authors: Nathan P. Lord, Rebecca L. Plimpton, Camilla R. Sharkey, Anton Suvorov, Jonathan P. Lelito, Barry M. Willardson and Seth M. Bybee

    Citation: BMC Evolutionary Biology 2016 16:107

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  10. Content type: Research article

    Kinetoplastea is a diverse protist lineage composed of several of the most successful parasites on Earth, organisms whose metabolisms have coevolved with those of the organisms they infect. Parasitic kinetopla...

    Authors: Ugo Cenci, Daniel Moog, Bruce A. Curtis, Goro Tanifuji, Laura Eme, Julius Lukeš and John M. Archibald

    Citation: BMC Evolutionary Biology 2016 16:109

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  11. Content type: Research article

    The Planar Cell Polarity pathway (PCP) has been described as the main feature involved in patterning cell orientation in bilaterian tissues. Recently, a similar phenomenon was revealed in cnidarians, in which ...

    Authors: Quentin Schenkelaars, Laura Fierro-Constain, Emmanuelle Renard and Carole Borchiellini

    Citation: BMC Evolutionary Biology 2016 16:69

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  12. Content type: Research article

    Neuropeptides are key players in information transfer and act as important regulators of development, growth, metabolism, and reproduction within multi-cellular animal organisms (Metazoa). These short protein-...

    Authors: Christian Derst, Heinrich Dircksen, Karen Meusemann, Xin Zhou, Shanlin Liu and Reinhard Predel

    Citation: BMC Evolutionary Biology 2016 16:51

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  13. Content type: Research article

    Nuclear genes of euglenids contain two major types of introns: conventional spliceosomal and nonconventional introns. The latter are characterized by variable non-canonical borders, RNA secondary structure tha...

    Authors: Rafał Milanowski, Natalia Gumińska, Anna Karnkowska, Takao Ishikawa and Bożena Zakryś

    Citation: BMC Evolutionary Biology 2016 16:49

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  14. Content type: Research article

    Low complexity regions (LCRs) are a ubiquitous feature in genomes and yet their evolutionary history and functional roles are unclear. Previous studies have shown contrasting evidence in favor of both neutral ...

    Authors: Fabia U. Battistuzzi, Kristan A. Schneider, Matthew K. Spencer, David Fisher, Sophia Chaudhry and Ananias A. Escalante

    Citation: BMC Evolutionary Biology 2016 16:47

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  15. Content type: Research article

    Understanding the evolutionary forces that influence variation in gene regulatory regions in natural populations is an important challenge for evolutionary biology because natural selection for such variations...

    Authors: Mitsuhiko P. Sato, Takashi Makino and Masakado Kawata

    Citation: BMC Evolutionary Biology 2016 16:35

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  16. Content type: Research article

    The increasing abundance of sequence data has exacerbated a long known problem: gene trees and species trees for the same terminal taxa are often incongruent. Indeed, genes within a genome have not all followe...

    Authors: Beatriz Mengual-Chuliá, Stéphanie Bedhomme, Guillaume Lafforgue, Santiago F. Elena and Ignacio G. Bravo

    Citation: BMC Evolutionary Biology 2016 16:32

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2016 Journal Metrics

  • Citation Impact
    3.221 - 2-year Impact Factor
    3.628 - 5-year Impact Factor
    1.266 - Source Normalized Impact per Paper (SNIP)
    1.806 - SCImago Journal Rank (SJR)

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    1483,328 downloads
    1015.5 Usage Factor


    Social Media Impact
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