From: Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries
Designation | Gene Name | Nucleotide sequence 5' → 3' | Annealing Temperature | Fragment Length (bp) | Original Publication |
---|---|---|---|---|---|
Cytb | cytochrome b | Â | Â | Â | Â |
L14723 |  | ACCAATGACATGAAAAATCATCGTT | 50°C | 1213 | [69] |
H15915 | Â | TCTCCATTTCTGGTTTACAAGAC | Â | Â | Â |
COI | Cytochrome c oxydase I | Â | Â | Â | Â |
BatL5310 |  | CCTACTCRGCCATTTTACCTATG | 48°C | 750 | [25] |
R6036R | Â | ACTTCTGGGTGTCCAAAGAATCA | Â | Â | Â |
IRBP1 | Interphotoreceptor retinoid binding protein (fragment 1) | Â | Â | Â | |
I1-Rattus |  | ATTGAGCAGGCTATGAAGAG | 58°C | 785 | this study |
J2-Rattus | Â | TAGGGCTTGCTCYGCAGG | Â | Â | Â |
IRBP2 | Interphotoreceptor retinoid binding protein (fragment 2) | Â | Â | Â | |
I2 |  | ATCCCCTATGTCATCTCCTACYTG | 52°C | 892 | [70] |
J1 | Â | CGCAGGTCCATGATGAGGTGCTCCGTGTCCTG | Â | Â | Â |
cytb barcode | Cytochrome b (museum specimens) | Â | Â | Â | |
MPLeopol-fw MPRattusSL-Rev |  | GAYAAAATYCCATTCCACCC TARTTRTCYGGGTCTCC | 48°C | 122 | this study |