Grouping (sample size) | Haplotype diversity (H d ) | Nucleotide diversity (π) | Tajima's D and Fu's F, and associated pvalues |
---|---|---|---|
Phylogenetic clades* | |||
Clade I (n = 14) | 0.956 +/- 0.038 | 0.004 +/- 0.002 | D = -0.94 (ns)/F = -3.01 (p = 0.05) |
Clade II (n = 4) | 1.000 +/- 0.177 | 0.006 +/- 0.004 | D = -0.37 (ns)/F = -0.12 (ns) |
Clade III (n = 12) | 0.894 +/- 0.063 | 0.003 +/- 0.002 | D = 0.57 (ns)/F = -1.33 (ns) |
Clade IV (n = 15) | 0.991 +/- 0.028 | 0.003 +/- 0.002 | D = -1.55 (p = 0.05)/F = -11.26 (p = 0.0001) |
Geographic regions | |||
western Amazonia (n = 6) | 1.000 +/- 0.096 | 0.010 +/- 0.002 | D = -0.87 (ns)/F = -0.77 (ns) |
Andean Foothill (n = 19) | 0.976 +/- 0.023 | 0.009 +/- 0.001 | D = -0.05 (ns)/F = -3.32 (ns) |
north Amazonia (n = 13) | 0.923 +/- 0.057 | 0.006 +/- 0.0005 | D = -1.00 (ns)/F = -0.81 (ns) |
south Amazonia (n = 7) | 1.000 +/- 0.006 | 0.002 +/- 0.0005 | D = -1.61 (p = 0.01)/F = -4.56 (p = 0.001) |
Eco-geographic regions | |||
North-East Amazon rainforest (n = 10) | 0.933 +/- 0.077 | 0.007 +/- 0.004 | D = -0.95 (ns)/F = -0.91 (ns) |
Pastizal" herbaceous habitat (n = 2) | 1.000 +/- 0.500 | 0.004 +/- 0.004 | - |
Llanos (n = 3) | 0.000 | 0.000 | - |
Choco Darien rainforest (n = 1) | - | 0.000 | - |
South East Amazon rainforest (n = 1) | - | 0.000 | - |
Upper Amazon rainforest (n = 22) | 0.978 +/- 0.189 | 0.009 +/- 0.005 | D = -0.58 (ns)/F = -3.92 (p = 0.05) |
Dry tropical forest (n = 4) | 1.000 +/- 0.177 | 0.001 +/- 0.001 | D = -0.75 (ns)/F = -2.37 (p = 0.01) |