Sample ID | Name of strain | System or location | Effective Depth (X) | Genome coverage (%) | DifferenceRate (%) |
---|---|---|---|---|---|
D1 | J7532 | Japan | 68.98 | 99.62 | 0.48 |
D2 | J04-010 | Japan | 13.04 | 96.33 | 0.56 |
D3 | J872 | Japan | 36.28 | 99.90 | 1.27 |
D4 | J106 | Japan | 9.14 | 95.88 | 0.51 |
D5 | N4 | Japan | 77.62 | 99.92 | 1.54 |
D6 | Cambodia | Cambodia | 32.67 | 99.98 | 0.65 |
D7 | Lao II | Laos | 12.88 | 97.42 | 1.32 |
D8 | India M3 | India | 51.2 | 99.22 | 0.44 |
D9 | Europe18 | Europe | 23.82 | 99.46 | 0.51 |
D10 | Italy16 | Italy, Europe | 24.12 | 99.46 | 0.35 |
D11 | Soviet Union NO.1 | Former SU, Europe | 10.98 | 94.75 | 0.41 |
D12 | 15-010 | Mutation | 8.99 | 93.71 | 1.28 |
D13 | 02-210 | Mutation | 51.37 | 99.96 | 0.43 |
D14 | 15-001 | Mutation | 49.61 | 99.72 | 1.36 |
D15 | Mutation M2 | Mutation | 22.03 | 99.62 | 1.32 |
D16 | A06E | Guangdong province, China | 75.04 | 99.71 | 1.52 |
D17 | Damao | Sichuan province, China | 28.66 | 99.11 | 0.64 |
D18 | Ankang NO.4 | Shanxi province, China | 79.93 | 99.91 | 0.62 |
D19 | ZT500 | Gansu province, China | 165.42 | 99.99 | 0.61 |
D20 | Zhugui | Zhejiang province, China | 77.61 | 99.77 | 0.43 |
D21 | Bilian | Jiangsu province, China | 62.83 | 99.49 | 1.4 |
D22 | ZT900 | Sichuan province, China | 80.81 | 99.61 | 1.05 |
D23 | ZT100 | Hunan province, China | 89.7 | 99.83 | 0.41 |
D24 | Sihong | Jiangsu province, China | 105.03 | 99.75 | 0.31 |
D25 | Xiaoshiwan | Zhejiang province, China | 20.46 | 98.31 | 0.59 |
D26 | C108 | Chongqing, China | 27.57 | 92.66 | 0.4 |
D27 | Sichuang M3 | Sichuan province, China | 51.3 | 99.67 | 0.58 |
D28 | ZT000 | Guizhou province, China | 166.85 | 99.96 | 0.53 |
D29 | Handan | Hebei province, China | 51.94 | 99.90 | 0.32 |
W1 | B. mandarina Ziyang | Sichuan province, China | 27.6 | 96.07 | 2.49 |
W2 | B. mandarina Nanchong | Sichuan province, China | 106.15 | 98.18 | 2.46 |
W3 | B. mandarina Hongya | Sichuan province, China | 25.27 | 94.18 | 1.94 |
W4 | B. mandarina Pengshan | Sichuan province, China | 76.03 | 95.45 | 1.95 |
W5 | B. mandarina Ankang | Shanxi province, China | 30.54 | 92.30 | 2.01 |
W6 | B. mandarina Yichang | Hubei province, China | 108.98 | 96.63 | 2.77 |
W7 | B. mandarina Yancheng | Jiangsu province, China | 72.06 | 97.10 | 2.03 |
W8 | B. mandarina Luzhou | Sichuan province, China | 40.54 | 92.45 | 2.33 |
W9 | B. mandarina Hunan | Hunan province, China | 114.57 | 96.91 | 2.03 |
W10 | B. mandarina Suzhou | Jiangsu province, China | 49.11 | 95.40 | 2.05 |
W11 | B. mandarina Rongchang | Chongqing, China | 79.31 | 95.89 | 2.04 |
W12 | B. mandarina Japan | Hokkaido, Japan | 13.52 | 81.47 | 0.81 |
Total | - | - | 2319.56 | Â | Â |