From: The fester locus in Botryllus schlosseri experiences selection
Fester A-type alleles | ||||||
---|---|---|---|---|---|---|
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
East Coast | 0.020 | 0.020 | 0.010 | 0.030 | 17 | 0.96 |
West Coast | 0.010 | 0.010 | 0.010 | 0.010 | 13 | 0.90 |
Fester B1-type alleles | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
East Coast | 0.010 | 0.030 | 0.010 | 0.010 | 8 | 0.95 |
Fester C-type alleles | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
East Coast | 0.010 | 0.030 | 0.010 | 0.020 | 13 | 0.93 |
40S_3A | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.001 | 0.014 | 0.000 | 0.002 | 6 | 0.533 |
Quissett, MA | 0.001 | 0.004 | 0.000 | 0.001 | 3 | 0.600 |
Sandwich, MA | 0.002 | 0.011 | 0.000 | 0.002 | 3 | 0.833 |
Monterey, CA | NA | NA | NA | NA | 1 | 0.000 |
Santa Barbara, CA | 0.006 | 0.025 | 0.000 | 0.006 | 2 | 0.500 |
Seattle, WA | 0.009 | 0.040 | 0.000 | 0.007 | 3 | 0.800 |
All populations | 0.003 | 0.014 | 0.000 | 0.005 | 9 | 0.658 |
60S_L6 | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.002 | 0.006 | 0.001 | 0.003 | 5 | 0.455 |
Quissett, MA | 0.001 | 0.003 | 0.000 | 0.002 | 5 | 0.433 |
Sandwich, MA | 0.002 | 0.005 | 0.000 | 0.002 | 5 | 0.547 |
Monterey, CA | 0.008 | 0.015 | 0.006 | 0.008 | 3 | 0.511 |
Santa Barbara, CA | 0.002 | 0.004 | 0.002 | 0.004 | 8 | 0.699 |
Seattle, WA | 0.002 | 0.007 | 0.001 | 0.003 | 8 | 0.678 |
All populations | 0.003 | 0.008 | 0.002 | 0.007 | 18 | 0.711 |
60S_L8 | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.001 | 0.003 | 0.001 | 0.002 | 5 | 0.524 |
Quissett, MA | 0.002 | 0.004 | 0.001 | 0.002 | 5 | 0.599 |
Sandwich, MA | 0.002 | 0.003 | 0.001 | 0.002 | 3 | 0.833 |
Monterey, CA | 0.001 | 0.003 | 0.000 | 0.001 | 2 | 0.500 |
Santa Barbara, CA | NA | NA | NA | NA | NA | NA |
Seattle, WA | 0.001 | 0.002 | 0.001 | 0.001 | 3 | 0.506 |
All populations | 0.002 | 0.003 | 0.001 | 0.001 | 5 | 0.593 |
60S_L10 | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.005 | 0.020 | 0.000 | 0.007 | 7 | 0.393 |
Quissett, MA | 0.007 | 0.032 | 0.000 | 0.007 | 6 | 0.693 |
Sandwich, MA | 0.003 | 0.014 | 0.000 | 0.004 | 2 | 0.333 |
Monterey, CA | 0.009 | 0.039 | 0.000 | 0.009 | 6 | 0.929 |
Santa Barbara, CA | 0.010 | 0.041 | 0.000 | 0.009 | 7 | 0.911 |
Seattle, WA | 0.008 | 0.035 | 0.000 | 0.005 | 10 | 0.776 |
All populations | 0.008 | 0.036 | 0.000 | 0.007 | 18 | 0.672 |
60S_L13 | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.007 | 0.018 | 0.004 | 0.005 | 13 | 0.833 |
Quissett, MA | 0.008 | 0.019 | 0.004 | 0.006 | 7 | 0.655 |
Sandwich, MA | 0.006 | 0.016 | 0.004 | 0.007 | 2 | 0.500 |
Monterey, CA | 0.003 | 0.009 | 0.001 | 0.002 | 3 | 0.644 |
Santa Barbara, CA | 0.007 | 0.021 | 0.003 | 0.005 | 4 | 0.714 |
Seattle, WA | 0.008 | 0.026 | 0.003 | 0.006 | 16 | 0.903 |
All populations | 0.010 | 0.028 | 0.004 | 0.006 | 19 | 0.833 |
71kda | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.004 | 0.014 | 0.000 | 0.005 | 10 | 0.804 |
Quissett, MA | 0.004 | 0.014 | 0.001 | 0.005 | 9 | 0.735 |
Sandwich, MA | 0.006 | 0.023 | 0.001 | 0.006 | 13 | 0.896 |
Monterey, CA | 0.009 | 0.037 | 0.000 | 0.007 | 5 | 0.867 |
Santa Barbara, CA | 0.008 | 0.032 | 0.000 | 0.006 | 19 | 0.943 |
Seattle, WA | 0.004 | 0.014 | 0.001 | 0.004 | 7 | 0.909 |
All populations | 0.008 | 0.029 | 0.001 | 0.007 | 47 | 0.906 |
actin | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.004 | 0.017 | 0.000 | 0.005 | 12 | 0.879 |
Quissett, MA | 0.006 | 0.025 | 0.000 | 0.005 | 14 | 0.931 |
Sandwich, MA | 0.005 | 0.021 | 0.000 | 0.006 | 12 | 0.918 |
Monterey, CA | 0.004 | 0.015 | 0.000 | 0.004 | 4 | 0.652 |
Santa Barbara, CA | 0.005 | 0.022 | 0.000 | 0.005 | 18 | 0.954 |
Seattle, WA | 0.005 | 0.020 | 0.000 | 0.004 | 6 | 0.818 |
All populations | 0.005 | 0.022 | 0.000 | 0.007 | 44 | 0.924 |
ADP/ATP translocase | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.008 | 0.029 | 0.001 | 0.007 | 13 | 0.863 |
Quissett, MA | 0.014 | 0.052 | 0.002 | 0.014 | 3 | 0.833 |
Sandwich, MA | 0.005 | 0.020 | 0.000 | 0.005 | 3 | 0.833 |
Monterey, CA | 0.020 | 0.082 | 0.000 | 0.020 | 2 | 1.000 |
Santa Barbara, CA | NA | NA | NA | NA | NA | NA |
Seattle, WA | 0.012 | 0.046 | 0.001 | 0.012 | 4 | 1.000 |
All populations | 0.009 | 0.034 | 0.001 | 0.007 | 18 | 0.915 |
Hsp90 | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.015 | 0.065 | 0.001 | 0.020 | 13 | 0.788 |
Quissett, MA | 0.010 | 0.044 | 0.001 | 0.016 | 13 | 0.812 |
Sandwich, MA | 0.018 | 0.079 | 0.001 | 0.012 | 7 | 0.911 |
Monterey, CA | 0.002 | 0.008 | 0.000 | 0.002 | 8 | 0.909 |
Santa Barbara, CA | 0.002 | 0.008 | 0.000 | 0.002 | 9 | 0.815 |
Seattle, WA | 0.014 | 0.063 | 0.001 | 0.013 | 3 | 0.464 |
All populations | 0.010 | 0.045 | 0.001 | 0.014 | 23 | 0.685 |
ma2_actin | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.003 | 0.013 | 0.000 | 0.004 | 9 | 0.831 |
Quissett, MA | 0.004 | 0.016 | 0.000 | 0.004 | 8 | 0.857 |
Sandwich, MA | 0.003 | 0.011 | 0.000 | 0.004 | 7 | 0.768 |
Monterey, CA | 0.004 | 0.017 | 0.000 | 0.006 | 3 | 0.385 |
Santa Barbara, CA | 0.004 | 0.016 | 0.000 | 0.004 | 4 | 0.458 |
Seattle, WA | 0.003 | 0.016 | 0.000 | 0.003 | 4 | 0.542 |
All populations | 0.005 | 0.019 | 0.000 | 0.006 | 13 | 0.777 |
mtCOI | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.009 | 0.031 | 0.002 | 0.016 | 4 | 0.491 |
Quissett, MA | 0.007 | 0.035 | 0.002 | 0.010 | 5 | 0.405 |
Sandwich, MA | 0.026 | 0.094 | 0.004 | 0.158 | 3 | 0.833 |
Monterey, CA | 0.002 | 0.007 | 0.000 | 0.003 | 2 | 0.400 |
Santa Barbara, CA | 0.004 | 0.015 | 0.002 | 0.010 | 6 | 0.468 |
Seattle, WA | 0.025 | 0.105 | 0.002 | 0.018 | 4 | 0.711 |
All populations | 0.021 | 0.093 | 0.002 | 0.013 | 11 | 0.725 |
vasa | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.004 | 0.011 | 0.001 | 0.004 | 6 | 0.733 |
Quissett, MA | 0.020 | 0.080 | 0.002 | 0.020 | 7 | 0.800 |
Sandwich, MA | 0.023 | 0.095 | 0.000 | 0.020 | 10 | 0.970 |
Monterey, CA | 0.012 | 0.047 | 0.001 | 0.010 | 5 | 0.857 |
Santa Barbara, CA | 0.025 | 0.097 | 0.003 | 0.020 | 8 | 0.859 |
Seattle, WA | 0.013 | 0.055 | 0.000 | 0.011 | 5 | 0.861 |
All populations | 0.022 | 0.088 | 0.002 | 0.026 | 23 | 0.750 |
Vigilin | ||||||
Population | π (All Sites) | π (Synonymous) | π (Nonsynonymous) | Θ-w (per site) | # Haplotypes | Haplotype diversity |
Falmouth, MA | 0.011 | 0.037 | 0.004 | 0.017 | 9 | 0.934 |
Quissett, MA | 0.023 | 0.080 | 0.007 | 0.017 | 15 | 0.980 |
Sandwich, MA | 0.019 | 0.065 | 0.007 | 0.016 | 11 | 0.958 |
Monterey, CA | 0.018 | 0.069 | 0.004 | 0.018 | 5 | 0.893 |
Santa Barbara, CA | 0.018 | 0.070 | 0.004 | 0.016 | 23 | 0.938 |
Seattle, WA | 0.018 | 0.064 | 0.004 | 0.017 | 5 | 0.822 |
All populations | 0.024 | 0.088 | 0.006 | 0.016 | 55 | 0.971 |