Table 3 Statistical associations between allele frequencies and a set of three explanatory variables (TEMP, temperature; LAT, latitude; LON, longitude) assessed using generalized linear models (GLM) and BAYENV based on the full data set with 8 locations (78 loci) and a reduced data set with 7 locations (80 loci)
From: Do North Atlantic eels show parallel patterns of spatially varying selection?
GLM | ||
|---|---|---|
Locus | Gene | p value |
8 populations | ||
TRIM_35_8416 | Tripartite motif-containing protein 35 | TEMP (r = 0.78; p = 0.023) |
NEX_19953 | Nexilin | LAT (r = 0.80; p = 0.018) |
GAPDH_20355 | Glyceraldehyde-3-phosphate dehydrogenase | LAT (r = 0.72; p = 0.045) + LON (r = 0.74; p = 0.042) |
KRT_13_20618 | Keratin | TEMP (r = 0.81; p = 0.015) |
UBI_A52_5049 | Ubiquitin A-52 | LON (r = 0.72; p = 0.044) |
PGK_1_11454 | Phosphoglycerate kinase | LON (r = 0.76; p = 0.031) |
PSA_4_21534 | Proteasome subunit alpha type-4 | LAT (r = 0.80; p = 0.018) |
ALDH_2_16634 | Aldehyde dehydrogenase 2 | LON (r = 0.72; p = 0.044) |
CST_21113 | Cystatin precursor | LON (r = 0.72 p = 0.043) |
7 populations | ||
TRIM_35_8416 | Tripartite motif-containing protein 35 | TEMP (r = 0.77; p = 0.042) |
NEX_19953 | Nexilin | LAT (r = 0.76; p = 0.045) |
GAPDH_20355 | Glyceraldehyde-3-phosphate dehydrogenase | LON (r = 0.73; p = 0.046) |
KRT_13_20618 | Keratin | TEMP (r = 0.82; p = 0.023) |
PSA_4_21534 | Proteasome subunit alpha type-4 | LAT (r = 0.76; p = 0.047) |
ALD_R | Aldose reductase | LON (r = 0.82; p = 0.016) |
BAYENV | ||
Locus | Gene | BF |
8 populations | ||
GAPDH_20355 | Glyceraldehyde-3-phosphate dehydrogenase | LAT (BF = 7.450) |
7 populations | ||
GAPDH_20355 | Glyceraldehyde-3-phosphate dehydrogenase | LAT (BF = 4.501) |
ALD_R | Aldose reductase | LON (BF = 3.295) |