Table 1 Summary statistics of X-linked and autosomal loci
Genomic Location | Number of Strains (NAa/NFb) | Number of Sites (NAa/NFb) | Divergencec | θsd NAa | θs/Divergencee NAa | Tajima's D NAa | θsc AFb | θs/Divergencee AFb | Tajima's D AFb |
|---|---|---|---|---|---|---|---|---|---|
2R | 12/12 | 486/411 | 0.06 | 9.05 (4.49–14.12) | 1.38 (0.69–2.39) | 0.51 | 5.04 (1.93–9.01) | 0.78 (0.24–1.53) | 1.07 |
2R | 11/12 | 449/482 | 0.05 | 8.45 (4.10–13.64) | 2.92 (1.11–5.94) | 0.43 | 8.50 (3.93–13.11) | 3.00 (1.24–6.08) | -0.79 |
2L | 11/11 | 325/487 | 0.06 | 5.65 (2.10 – 9.82) | 1.01 (0.35–1.98) | -0.79 | 13.21 (7.70–19.59) | 2.40 (1.23–4.03) | -0.77 |
2L | 11/12 | 458/424 | 0.08 | 8.81 (4.19 – 13.78) | 1.91 (0.85–3.52) | -0.13 | 14.45 (9.17–20.90) | 2.99 (1.61–5.26) | -0.93 |
3R | 12/9 | 402/474 | 0.06 | 7.65 (3.50 – 12.79) | 1.27 (0.56–2.36) | -0.75 | 24.30 (15.93–32.62) | 3.96 (2.33–6. 40) | -0.84 |
3R | 12/11 | 322/329 | 0.06 | 14.49 (8.65 – 20.96) | 2.78 (1.38–4.89) | -0.53 | 15.64 (9.57–22.07) | 2.98 (1.60–5.32) | 0.31 |
3L | 11/12 | 444/462 | 0.07 | 10.24 (5.14 – 15.42) | 2.16 (1.07–3.89) | -0.48 | 36.27 (27.55–46.00) | 7.56 (4.66–11.95) | 1.02 |
3L | 12/12 | 412/365 | 0.06 | 9.46 (4.39 – 15.35) | 1.97 (0.92–3.48) | -0.12 | 25.88 (17.77–34.15) | 5.36 (3.07–9.15) | -1.46 |
X | 12/11 | 356/394 | 0.07 | 16.24 (10.61–22.72) | 4.35 (2.13–8.12) | 0.67 | 18.43 (11.63–25.82) | 4.93 (2.49–9.18) | -1.12 |
X | 12/11 | 391/385 | 0.08 | 5.49 (1.57 – 9.44) | 0.87 (0.31 – 1.70) | 0.33 | 16. 41 (9.85–23.28) | 2.61 (1.33–4.65) | 0.88 |
X | 10/10 | 346/485 | 0.05 | 5.01 (0.91 – 10.14) | 1.45 (0.32–3.00) | 0.015 | 12.53 (7.64–18.79) | 3.68 (1.85–7.12) | -1.02 |
X | 12/11 | 447/406 | 0.09 | 15.69 (9.29–22.79) | 3.20 (1.60–5.59) | 0.74 | 39.06 (28.89–48.99) | 7.95 (4.81–12.95) | -0.30 |
X | 12/11 | 383/355 | 0.12 | 5.97 (1.72–11.18) | 0.48 (0.16–0.94) | -0.49 | 28.28 (18.56–37.94) | 2.22 (1.35–3.47) | -1.21 |
X | 12/10 | 458/481 | 0.07 | 15.05 (9.13–22.23) | 2.32 (1.21–3.93) | 1.25 | 15.94 (9.69–22.31) | 2.52 (1.40–4.12) | -.0.42 |
X | 12/12 | 474/471 | 0.03 | 0.68 (0 – 2.09) | 0.56 (0.23–1.63) | -1.14 | 9.01 (4.84–14.52) | 5.28 (2.00–12.95) | -1.66 |
X | 12/12 | 441/410 | 0.03 | 2.19 (0–5.17) | 1.08 (0.23–2.77) | –0.38 | 2.24 (0–5.15) | 1.09 (0.23–3.21) | -0.83 |
Average Overall |  |  |  | 9.00 (7.70–10.20) | 1.72 (1.46–2.00) |  | 17.52 (15.73–19.17) | 3.36 (2.96–3.76) |  |
Average autosomal |  |  |  | 9.39 (7.75–11.08) | 1.79 (1.39–2.19) |  | 17.79 (15.24–20.24) | 3.35 (2.78–4.03) |  |
Average X linked |  |  |  | 8.51 (6.90–10.29) | 1.67 (1.27–2.13) |  | 17.30 (15.02–19.93) | 3.38 (2.74–4.13) |  |