Selected Branch | Model | n.p. | ln L | Parameter Estimates | Bayes Empirical Bayes Identified Sites * | Likelihood Ratio Test P-value |
---|---|---|---|---|---|---|
N/A | M0 (one-ratio) | 33 | -2127.37 | ω = 0.08737 | none | N/A |
 | Site-specific models | |||||
 | M1a (neutral) | 34 | -2097.31 | p0 = 0.91742, ω0 = 0.05054 | N/A | N/A |
 | M2a (selection) | 36 | -2097.31 | p0 = 0.91768, ω0 = 0.05052, p2 = 0.04090, ω2 = 0.99980 | 275 | P = 1 (vs. m1a) |
 | M3 (discrete, K = 3) | 37 | -2088.38 | p0 = 0.53422, p1 = 0.38154, ω0 = 0.00000, ω1 = 0.12511, ω2 = 0.63618 | none | P < 0.000001 (vs. m0) |
 | M7 (β) | 34 | -2089.48 | p = 0.21896, q = 1.82556 | N/A | N/A |
 | M8 (β & ω) | 36 | -2088.91 | p = 0.24125, q = 2.23372, p0 = 0.99249, ω = 1.66242 | 275 | P = 0.568523 (vs. m7) |
 | Branch-specific models | |||||
X 'green' | two-ratio | 34 | -2123.10 | ω0 = 0.0806, ω1 = 0.4259 | N/A | P = 0.003463 (vs. m0) |
Y 'transducin' | two-ratio | 34 | -2125.68 | ω0 = 0.0832, ω1 = 0.4523 | N/A | P = 0.066388 (vs. m0) |
 | Branch-site (BS) models | |||||
X 'green' | BS model A (null) | 35 | -2094.55 | p0 = 0.73148, ω0 = 0.04521, p1 = 0.06817 | N/A | N/A |
 | BS model A (alternative) | 36 | -2093.93 | p0 = 0.86007, ω0 = 0.04576, p1 = 0.06817, ω2 = 16.53309 | 271, 275, 277, 279, 285, 286, 302 | P = 0.266644 (vs. BS model A [null]) |
Y 'transducin' | BS model A (null) | 35 | -2093.10 | p0 = 0.31761, ω0 = 0.04432, p1 = 0.03013 | N/A | N/A |
 | BS model A (alternative) | 36 | -2093.10 | p0 = 0.32723, ω0 = 0.04442, p1 = 0.03012, ω2 = 1.00000 | 248, 249, 256, 261, 263 | P = 1 (vs. BS model A [null]) |