# of sitesa | S | # of Indelsb (length nt) | πc × 10-3 (SD × 10-3) | π+d × 10-3 (SD × 10-3) | πsyn × 10-3 | πnsyn × 10-3 | Tajima's D-Test (P value) | |
---|---|---|---|---|---|---|---|---|
PROTEIN-CODING (by gene) | ||||||||
atpA | 501 | 18 | 0 | 17.30 (2.67) | --- | 71.08 | 0 | 0.06 (>0.1) |
atpF | 213 | 0 | 0 | 0 | --- | 0 | 0 | --- |
atpI | 366 | 3 | 0 | 3.51 (1.43) | --- | 13.85 | 0 | -1.01 (>0.1) |
cemA | 462 | 2 | 0 | 2.27 (4.40) | --- | 5.34 | 1.34 | 1.17 (>0.1) |
orf1995 | 1896 | 8 | 0 | 1.41 (0.56) | --- | 2.57 | 1.09 | -0.96 (>0.1) |
petA | 954 | 0 | 0 | 0 | --- | 0 | 0 | --- |
petG | 45 | 0 | 0 | 0 | --- | 0 | 0 | --- |
psaJ | 126 | 0 | 0 | 0 | --- | 0 | 0 | --- |
psbA | 435 | 8 | 0 | 9.61 (1.46) | --- | 36.5 | 1.7 | 1.48 (>0.1) |
psbK | 72 | 0 | 0 | 0 | --- | 0 | 0 | --- |
rpoC2 | 252 | 6 | 0 | 13.61 (2.85) | --- | 10.85 | 14.33 | 2.03 (<0.05) |
rpl2 | 321 | 2 | 0 | 3.56 (0.74) | --- | 7.28 | 2.36 | 1.64 (>0.1) |
rps2 | 87 | 0 | 0 | 0 | --- | 0 | 0 | --- |
rps3 | 126 | 0 | 0 | 0 | --- | 0 | 0 | --- |
rps9 | 462 | 4 | 1 (21) | 3.50 (1.01) | --- | 9.78 | 1.61 | -0.04 (>0.1) |
rps11 | 105 | 0 | 0 | 0 | --- | 0 | 0 | --- |
rps12 | 321 | 0 | 0 | 0 | --- | 0 | 0 | --- |
rps19 | 183 | 0 | 0 | 0 | --- | 0 | 0 | --- |
tufA | 213 | 0 | 0 | 0 | --- | 0 | 0 | --- |
ycf3 | 315 | 2 | 0 | 1.81 (1.25) | --- | 3.84 | 1.19 | -1.28 (>0.1) |
ycf4 | 399 | 0 | 0 | 0 | --- | 0 | 0 | --- |
INTERGENIC (by region) | ||||||||
atpA/psbI | 343 | 1 | 0 | 1.75 (0.51) | 1.75 (0.51) | --- | --- | 1.22 (>0.1) |
atpF/rps11 | 1556 | 86 | 16 (368) | 25.61 (9.77) | 30.10 (11.15) | --- | --- | -1.08 (>0.1) |
atpI/psaJ | 328 | 9 | 0 | 12.49 (2.42) | 12.49 (2.42) | --- | --- | 0.61 (>0.1) |
petG/rps3 | 805 | 5 | 3 (3) | 2.97 (0.44) | 4.50 (0.76) | --- | --- | 0.57 (>0.1) |
psaJ/rps12 | 310 | 2 | 0 | 3.38 (0.65) | 3.38 (0.65) | --- | --- | 1.17 (>0.1) |
psbK/tufA | 828 | 4 | 2 (117) | 1.18 (0.37) | 3.47 (0.53) | --- | --- | 0.06 (>0.1) |
psbI/cemA | 271 | 3 | 2 (2) | 5.20 (1.18) | 8.86 (2.00) | --- | --- | 0.00 (>0.1) |
rpl2/rps19 | 808 | 36 | 9 (164) | 27.36 (5.14) | 33.69 (5.70) | --- | --- | 0.99 (>0.1) |
rps3/rpoC2 | 1474 | 88 | 32 (462) | 41.60 (6.65) | 53.19 (9.01) | --- | --- | 0.71 (>0.1) |
rps9/ycf4 | 344 | 1 | 1 (21) | 1.65 (0.53) | 3.29 (0.69) | --- | --- | 1.03 (>0.1) |
rps18/rps2-1 | 1115 | 45 | 19 (418) | 30.47 (9.57) | 42.17 (11.33) | --- | --- | 0.90 (>0.1) |
ycf3/ycf4 | 179 | 0 | 0 | 0 | 0 | --- | --- | --- |
23S-1/23S-2 | 909 | 6 | 2 (46) | 3.97 (0.67) | 5.28 (0.89) | --- | --- | 2.10 (<0.05) |
23S-2/5S | 89 | 0 | 0 | 0 | 0 | --- | --- | --- |