Species/group | Mapped unique mRNA (No.) | Most frequent 4mer motif at the poly(A) sites1 | % | Most frequent 6mer motif within 50 bases upstream2 | % |
---|---|---|---|---|---|
Microorganisms | |||||
Fungi3 | 209 | UUUA | 7.2 | AAUAAA | 19.6 |
Protists 4 | |||||
Blastocystis hominis | 1 717 | UUUG | 5.01 | AAGAAG | 10.34 |
Chlamydomonas reinhardtii | 176 | UCCA | 4.0 | UGUAAC | 31.3 |
Phytophthora infestans | 63 | CUCA | 6.4 | AAAAUA5 | 20.6 |
Trypanosoma cruzi | 52 | UUGA | 19.2 | UGUUUU | 38.5 |
Dicotyledonous plants | |||||
Arabidopsis thaliana | 4 431 | UUUA | 4.9 | AAUAAA | 13.4 |
Medicago truncatula | 136 | UUCA | 9.6 | UAUUUU | 17.7 |
Populus trichocarpa | 1 371 | UUUA | 5.6 | UAUUUU | 12.6 |
Solanum lycopersicum | 450 | UUUA | 8.2 | UAUUUU | 12.9 |
Monocotyledonous plants | |||||
Oryza sativa | 693 | UUUA | 7.4 | AAUAAA | 15.3 |
Sorghum bicolor | 1 685 | UUCA | 5.5 | AAUAAA | 11.2 |
Zea mays | 10 491 | UUCA | 4.6 | AAUAAA | 9.0 |
Animals | |||||
Apis mellifera | 187 | AAUA | 9.6 | AAUAAA | 53.5 |
Bos taurus | 2 679 | UUUA | 3.7 | AAUAAA | 63.6 |
Caenorhabditis elegans | 389 | UUUA | 11.6 | AAUAAA | 50.6 |
Callithrix jacchus | 79 | CUUA | 10.1 | AAUAAA | 55.7 |
Canis lupus familiaris | 108 | UUUA | 8.3 | AAUAAA | 68.5 |
Ciona intestinalis | 287 | UUUA | 6.3 | AAUAAA | 48.4 |
Danio rerio | 7 246 | UUUA | 6.0 | AAUAAA | 61.7 |
Drosophila melanogaster | 954 | AACA | 9.0 | AAUAAA | 59.0 |
Equus caballus | 97 | AUUA | 7.2 | AAUAAA | 46.4 |
Gallus gallus | 788 | AACA | 4.6 | AAUAAA | 58.8 |
Homo sapiens | 30 499 | UUUA | 5.0 | AAUAAA | 58.2 |
Mus musculus | 8 709 | UUUA | 5.4 | AAUAAA | 61.2 |
Oryctolagus cuniculus | 224 | AUUA | 5.4 | AAUAAA | 59.8 |
Pongo abelii | 1 965 | CUCA | 5.9 | AAUAAA | 58.5 |
Rattus norvegicus | 14 263 | UUUA | 6.4 | AAUAAA | 56.0 |
Sus scrofa | 8 114 | GACA | 8.1 | AAUAAA | 40.5 |
Taeniopygia guttata | 808 | UGCA | 4.2 | AAUAAA | 59.9 |
Animal average | 4 116 | AAUAAA | 53.9 |