Lineage isolation in the face of active gene flow in the coastal plant wild radish is reinforced by differentiated vernalisation responses

Table 1 Summary of the nucleotide polymorphisms and neutrality tests of fourteen loci for wild radish

Locus	Aligned size (bp)	No. of seqs.	Largest non-recombining blocks (bp)	R _m	S	θ _w	π	N _h	H _d	Neutrality tests
Locus	Aligned size (bp)	No. of seqs.	Largest non-recombining blocks (bp)	R _m	S	θ _w	π	N _h	H _d	D	D*	F*
PHYA	473	140	149	8	5	0.00608	0.01008	4	0.610	1.32690	1.00882	1.31890
PHYB	420	142	151	6	5	0.00599	0.01271	6	0.506	2.26059*	−0.09887	0.81392
PHYC	480	134	236	2	6	0.00465	0.00669	7	0.635	0.94466	1.09653	1.23822
PHYE	378	144	260	2	4	0.00278	0.00654	4	0.583	2.53131*	0.91024	1.70217
TBL19	415	134	347	2	3	0.00179	0.00339	4	0.537	1.52497	0.80285	1.21693
TBL21	559	140	175	5	3	0.00311	0.00576	4	0.517	1.44525	−0.65975	0.01794
MYB29	441	140	441	0	5	0.00206	0.00527	4	0.658	3.16093**	1.00882	2.04191**
COL4	577	136	280	4	4	0.00325	0.00374	5	0.372	0.30524	−1.19153	−0.82014
COL5	357	140	135	6	4	0.00537	0.00361	4	0.459	−0.61567	−2.83513*	−2.48960*
CHI	366	144	274	2	3	0.00198	0.00209	4	0.536	0.09504	−0.66570	−0.49647
VEL2	317	142	196	2	3	0.00277	0.00498	4	0.708	1.34849	0.79831	1.14817
LFY	235	142	235	0	11	0.00847	0.00281	5	0.494	−1.66219	−3.50335**	−3.38634**
CRY2	406	132	242	5	9	0.00682	0.01042	5	0.696	1.26908	1.30095	1.53412
CRY3	332	132	112	3	2	0.00327	0.00760	3	0.441	1.93184	0.66462	1.24454
Mean	411	139	231	3.4	4.8	0.00417	0.00612	4.5	0.554	-	-	-

R _m estimate of minimum number of recombination events, S number of polymorphic sites, θ _w Watterson’s estimator of θ per base pair, π nucleotide diversity, N _h number of haplotypes, H _d haplotype diversity, D Tajima’D and Fu & Li’s D* and F*
Significant levels: *, 0.01 ≤ p < 0.05; **, p < 0.01

ISSN: 2730-7182