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Table 3 List of the primer pairs used for qRT-PCR experiments and to synthesise riboprobes

From: Evolution and expression of the phosphodiesterase 6 genes unveils vertebrate novelty to control photosensitivity

qRT-PCR primers

Gene

Forward primer 5′–3′

Reverse Primer 5′–3′

Product length

pde6a

CAGTCAACAAGATCGGGGCT

GCTCAGGTGAAACACTCGGA

104 bp

pde6b

ACTCACGACAGGCAAACTGA

CATGCAGCTTGGCTAGAGGA

146 bp

pde6c

ACTCCTGATGGCAGGGAGAT

AGCAACATAGGTGGGCAGTC

135 bp

pde6ga

CACAAGGGCCCACCTAAGTT

AACTCCAGGTGACTGTACGC

164 bp

pde6gb

GTTCAAGAGCAAGCCCCCAA

GTGCCTAAACCTTCCATGCC

75 bp

pde6ha

CTTCGGAGACGACATCCCAG

ATCGCTGAGCTCCATGTCTC

94 bp

pde6hb

CCTGGACAGAAAGGGTTTGGT

CTGAGCTCCATGTCCCCGAA

104 bp

pde6i

ACAACTACACCCAGAAGCGG

TGCCAAGACCATCCATTCCT

127 bp

actb1

GGCACGAGAGATCTTCACTCCCC

CCATGCCAACCATCACTCCCTGA

195 bp

tuba1b

CGGAGCTGGAAAACACGTCCCC

TGGTCAGACAGTTTGCGAACCCTA

216 bp

Probe primers

pde6ga

TCCACCAGCAACATCCTGCACC

CGCGCTATGGCAGACGCTGA

679 bp

pde6gb

TCTGCCATGTCCTCCATCGGC

AGACGAGGCACCGAGGCACA

381 bp

pde6ha

GGCGCTCTCAGGCCAACACA

AGGCACAAACACAATCTCATGCACA

205 bp

pde6hb

TGGCCAAATACGGCATCATCT

CATCCATCGTGGCTGCTACA

280 bp

  1. The current table specifies the primer pair sequences used to amplify gene sequences either to perform qRT-PCR or to synthesise the antisense and sense riboprobes used in ISH experiments. Actin beta I (actb1) and tubulin alpha 1b (tuba1b) were used as housekeeping genes in the qRT-PCR experiments