From: Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar
 | ACMV DNA-A | ACMV DNA-B | SACMV DNA-A | EACMV DNA-A | EACMKV DNA-A | EACMCV DNA-A | EACMV-like DNA-B | EACMCV DNA-B |
---|---|---|---|---|---|---|---|---|
[FS] Total sequences | 212 | 95 | 132 | 201 | 114 | 29 | 215 | 10 |
[FS] Total diversity (mean Id%) | 96.6 % [85.9 %–100 %] | 93.2 % [90.0 %–100 %] | 98.6 % [90.1 %–100 %] | 94.3 % [83.5 %–100 %] | 95.7 % [84.3 %–100 %] | 94.7 % [89.7 %–99.9 %] | 92.2 % [87.3 %–100 %] | 90.3 % [84.8 %–97.3 %] |
[FS] MG sequences | 93 | 15 | 130 | 1 | 43 | 13 | 98 | 4 |
[FS] MG diversity (mean Id%) | 98.5 % [97.1 %–100 %] | 97.1 % [95.5 %–99.9 %] | 98.7 % [93.3 %–100 %] | / | 94.4 % [84.3 %–100 %] | 96.3 % [93.1 %–99.9 %] | 97.6 % [90.3 %–100 %] | 91.1 % [84.8 %–94.8 %] |
[FS] MG detected recombinants (%) | 0 (0Â %) | 0 (0Â %) | 8 (6Â %) | 1 (100Â %) | 17 (40Â %) | 10 (77Â %) | 2 (2Â %) | 1 (25Â %) |
[core CP] Total sequences | 218 | / | 132 | 244 | / | / | ||
[core CP] Total diversity (mean Id%) | 97.0 % [91.5 %–100 %] | / | 98.5 % [80.3 %–100 %] | 95.6 % [89.8 %–100 %] | / | / | ||
[core CP] MG sequences | 93 | / | 130 | 51 | / | / | ||
[core CP] MG diversity (mean Id%) | 98.7 % [95.6 %–100 %] | / | 98.8 % [82.1 %–100 %] | 94.9 % [90.0 %–100 %] | / | / | ||
Introduction events | 1 | 1 | / | 3–4 | 1 | / | ||
Introduction dates (95 % HPD) | 1996–2004 [1995–2005] | 1940–1974 [1924–1986] | / | 1988–1990 [1982–1997] | 1961–1978 [1921–1989] | / | ||
1988–1996 [1983–2003] | ||||||||
1984–2003 [1971–2006] | ||||||||
1997–1999 [1994–2003] | ||||||||
Substitution rates (subs/site/year) | 3.83 × 10−3 [2.82 × 10−3; 4.89 × 10−3] | 5.64 × 10−4 [4.13 × 10−4; 7.14 × 10−4] | / | 1.69 × 10−3 [1.31 × 10−3 to 2.12 × 10−3] | 1.10 × 10−3 [9.57 × 10−4; 1.28 × 10−3] | / |