Codon frequency model | LRT Models | Degrees of freedom | −2ΔLnLd | p value | % of sites (average dN/dS) | Positively selected sites |
---|---|---|---|---|---|---|
F3x4 | ||||||
 | M1a vs M2aa | 2 | 18.33 | 1.05x10−4 | 0.99% (2.72) |  |
 | M7 vs M8b | 2 | 46.36 | 8.58x10−11 | 4.67% (1.49) | G137 (BEB, REL, FEL), A297 (BEB), L298 (BEB, REL, FEL), E316 (BEB), G351 (BEB, REL) |
 | M8ac vs M8 | 1 | 11.79 | 5.96x10−4 |  | |
F61 | ||||||
 | M1a vs M2a | 2 | 9.15 | 1.03x10−2 | 0.75% (2.40) |  |
 | M7 vs M8 | 2 | 39.46 | 2.69x10−9 | 4.93% (1.32) |  |
 | M8a vs M8 | 1 | 6.68 | 9.77x10−3 |  |  |