Skip to main content

Table 2 Data availability, relative age and node density of poorly supported regions

From: Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life

 

informative loci

data overlap

relative age

node density

region A

9 → 64.3%

100%

0.88 - 0.97

0.529

region B

4 → 28.6%

83.3%

0.35 - 0.53

0.449

region C

7 → 50.0%

60.3%

0.33 - 0.53

0.548

region D

5 → 35.4%

57.5%

0.34 - 0.43

0.787

region E

3 → 21.4%

75.8%

0.14 - 0.25

1.000

  1. The four statistics presented in this table describe the current data availability for each of the five poorly supported regions and the relative difficulty of resolving them. The proportion of potentially informative loci and the data overlap among potentially informative loci measure current data availability. Potentially informative loci are those that are present for more than three of the OTUs in the matrix. Data overlap is given as the average relative edge weight in the intersection graph of informative loci (see methods). The relative age and node density may indicate how difficult resolving the region will be. The relative age represents how ancient the region is, on a scale from zero (the present) to one (the root of our tree). The node density index is proportional to the number of nodes that need to be resolved per time unit (see methods). The partial data availability matrices for each region can be found in Additional file 3.