Skip to main content

Advertisement

Springer Nature is making SARS-CoV-2 and COVID-19 research free. View research | View latest news | Sign up for updates

Table 4 Average quartet distances between the model trees and the MP trees inferred from the different trimmed multiple sequence alignments

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

   Level of divergence
   ×1 ×2 ×3
initial   0.1858 0.1639 0.1587
BMGE (BLOSUM30) 0.1189 0.0601 0.0780
BMGE (BLOSUM62) 0.0949 0.0610 0.3011
BMGE (BLOSUM95) 0.0884 0.0630 0.3194
Gblocks (relaxed) 0.0677 0.0608 0.1026
trimAl (strictplus) 0.1211 0.1085 0.1182
trimAl (automated1) 0.1435 0.1142 0.1230
Noisy   0.1073 0.0965 0.0983
  1. For each column, the best (i.e. lower) distance is written in boldface characters. Average quartet distances that are not significantly different to this best value (as assessed by a sign test) are underscored.