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Table 6 ML bootstrap-based (boot.) and aLRT-based confidence values derived from different character supermatrices.

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

   (1) (1') (2) (3)
   boot. aLRT aLRT boot. aLRT boot. aLRT
initial   0.60 0.389 1.000 0.92 0.919 0.07 0.000
BMGE (BLOSUM30) 0.65 0.673 0.999 0.86 0.864 0.06 0.000
BMGE (BLOSUM62) 0.78 0.725 1.000 0.42 0.296 0.29 0.000
BMGE (BLOSUM95) 0.83 0.826 0.999 0.21 0.000 0.46 0.711
Gblocks (relaxed) 0.64 0.311 0.999 0.80 0.895 0.10 0.000
trimAl (strictplus) 0.59 0.379 0.999 0.91 0.973 0.03 0.000
trimAl (automated1) 0.74 0.686 1.000 0.93 0.955 0.05 0.000
Noisy   0.81 0.936 1.000 0.77 0.776 0.22 0.000
  1. Nodes (1), (1'), (2) and (3) are indicated on the phylogenetic trees in Figure 6. Nodes (1) and (1') correspond to the monophyly of Unikonts. Paraphyly and monophyly of Archaeplastida correspond to nodes (2) and (3), respectively. For each column, the best (i.e. higher) confidence value is written in boldface characters.