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Table 2 Identity and sequence details of the set of 19 genes targeted for phylogenetic purposes

From: A multi gene sequence-based phylogeny of the Musaceae (banana) family

Candidate gene designation Original MusaEST (NCBI accession number) a Blast homology Corresponding O. sativachromosome Homologous region on the O. sativachromosome (bp) b Amplified successfully from the outgroup species (S. nicolai) Intron fraction in the final alignment (%) Aligned sequence length (bp) c Mean GC content (%) c
g-1 FF561021.1 ATP:citrate lyase Chr. 1 11000940 - 11002303 yes 81.5 840 [761] 34.8 [34.6]
g-2 ES433688.1 Stomatal cytokinesis defective protein Chr. 1 22165522 - 22168085 yes 39.0 776 [720] 39.4 [39.5]
g-3 FF558855.1 Electron transport protein SCO1/SenC family protein Chr. 2 3229271 - 3231294 yes 90.8 882 [869] 33.3 [33.4]
g-4 ES437588.1 Putative non-phototropic hypocotyl 3 (NPH3) Chr. 2 21628715 - 21631333 no 33.5 529 62.7
g-5 ES436517.1 Endoribonuclease dicer homolog Chr. 3 1177218 - 1178862 yes 45.3 890 [827] 36.9 [37.5]
g-6 FF559301.1 CASP protein-like Chr. 3 28468384 - 28470215 yes 75.6 897 [863] 37.6 [37.8]
g-7 FF559765.1 Zeaxanthin epoxidase Chr. 4 22349032 - 22350073 no 70.5 909 40.4
g-8 ES437560.1 Na/H antiporter Chr. 5 2717353 - 2718249 no 33.2 487 47.6
g-9 FF561211.1 Protein of unknown function; DUF89 family protein Chr. 6 12551039 - 12553284 yes 86.9 1045 [942] 33.5 [33.5]
g-10 ES436526.1 T-complex protein 1, eta subunit (TCP-1-eta) Chr. 6 28301038 - 28302942 no 69.3 1154 34.1
g-11 ES434922.1 NAD+ synthase domain containing protein Chr. 7 3637535 - 3641458 yes 54.5 794 [747] 36.5 [36.3]
g-12 FF561580.1 Ribosomal protein s6 RPS6-2 Chr. 7 25669518 - 25671532 no 67.7 755 39.7
g-13 FF559780.1 mRNA capping enzyme, large subunit family protein Chr. 8 4670797 - 4673706 no 91.2 1433 37.2
g-14 FF560522.1 Methylcrotonyl-CoA carboxylase beta chain Chr. 8 20354213 - 20356265 no 87.8 767 34.1
g-15 FF560378.1 Annexin-like protein Chr. 9 13652033 - 13655072 no 92.5 737 38.7
g-16 ES436518.1 Succinoaminoimidazole-carboximide ribonucleotide synthetase family protein Chr. 9 17688901 - 17690929 no 72.0 587 36.2
g-17 FF558349.1 Methionine aminopeptidase 1 Chr. 10 18996256 - 18997164 no 73.4 746 35.9
g-18 FF559189.1 Initiation factor 2B family protein Chr. 10 12576657 - 12577797 yes 95.9 915 [915] 34.1 [34.1]
g-19 ES436684.1 DNA polymerase delta catalytic subunit Chr. 11 4368226 - 4369480 yes 74.0 878 [760] 35.4 [36.2]
  1. a The Musa EST sequence from which the corresponding gene fragment was derived.
  2. b Genomic location in rice.
  3. c Data in square brackets include the outgroup S. nicolai.