Figure 2From: Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genesatpB dataset: Comparison of all models presented in this paper to the GTR model, when grouping the first and second codon positions together. The performance of "traditional" codon partition models (up to the dotted horizontal line) can be improved significantly by assuming context-dependent evolution at the third codon position. As can be seen from this figure, such context-dependent codon partition models systematically outperform the (independent) codon partition models in terms of model fit.Back to article page