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Table 1 atpB dataset: estimates per codon position for the nucleotide frequencies, among-site rate variation distribution and relative rates (for the GTR123123+CP123+F123+FF16+3F model).

From: Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes

  Frequencies   
CP A C G T CP123
1 0.2396
[0.21; 0.28]
0.2216
[0.19; 0.26]
0.3717
[0.33; 0.42]
0.1671
[0.14; 0.20]
0.1579
[0.11; 0.24]
0.1066
[0.08; 0.14]
2 0.2804
[0.24; 0.33]
0.2298
[0.19; 0.27]
0.1656
[0.13; 0.20]
0.3242
[0.28; 0.38]
0.0946
[0.01; 0.15]
0.0512
[0.04; 0.07]
3 0.3784
[0.35; 0.41]
0.0875
[0.08; 0.10]
0.0707
[0.06; 0.08]
0.4634
[0.43; 0.50]
0.8716
[0.73; 1.04]
2.8422
[2.80; 2.88]
  1. Shown are mean estimates of 100.000 MCMC iterations, discarding the first 20.000 iterations as the burn-in, and the corresponding 95% credibility intervals. The values in the table clearly illustrate the different substitution dynamics at the three codon positions.