From: Sex in the PAC: A hidden affair in dark septate endophytes?
Gene | Analysis | λ1 | df1 | 2Δλ1 | p-value | dN/dS | Parameters |
---|---|---|---|---|---|---|---|
MAT1-1-1 | M0: one ratio | -2205.4733 | 4 | 5.9586 | 0.2023 | 0.4280 | ω = 0.4280 |
 | M3: discrete (κ = 3) | -2202.4940 |  |  |  | 0.4462 | p0 = 0.3732, ω0 = 0.7052; p1 = 0.3932, ω1 = 0.1117; p2 = 0.2336, ω2 = 0.7052 |
 | M1a: nearly neutral | -2202.6642 | 2 | 0.0000 | 1.0000 | 0.4599 | p0 = 0.6556, ω0 = 0.1761; p1 = 0.3440, ω1 = 1 |
 | M2a: positive selection | -2202.6642 |  |  |  | 0.4599 | p0 = 0.6556, ω0 = 0.1761; p1 = 0.2332, ω1 = 1; p2 = 0.1109, ω2 = 1 |
 | M7: β | -2202.5615 | 2 | 0.0000 | 1.0000 | 0.4507 | p0 = 0.4117; q = 0.5019 |
 | M8: β & ω > 1 | -2202.5615 |  |  |  | 0.4507 | p0 = 0.1000 p = 0.4117 q = 0.5019; (p1 = 0.00001) ω = 1.0000 |
MAT1-1-3 | M0: one ratio | -1706.3379 | 4 | 20.5175 | 0.0004* | 0.295 | ω = 0.2951 |
 | M3: discrete (κ = 3) | -1696.0792 |  |  |  | 0.3103 | p0 = 0.0007, ω0 = 0.1116; p1 = 0.9232, ω1 = 0.1117; p2 = 0.0761, ω2 = 2.7212 |
 | M1a: nearly neutral | -1697.3663 | 2 | 2.5742 | 0.2761 | 0.2598 | p0 = 0.7402, ω0 = 0; p1 = 0.2598, ω1 = 1 |
 | M2a: positive selection | -1696.0792 |  |  |  | 0.3103 | p0 = 0.9239, ω0 = 0.1117; p1 = 0, ω1 = 1; p2 = 0.0761, ω2 = 2.7212 |
 | M7: β | -1697.6108 | 2 | 3.0594 | 0.2166 | 0.3000 | p = 0.0050; q = 0.0119 |
 | M8: β & ω > 1 | -1696.0811 |  |  |  | 0.3104 | p0 = 0.9244 p = 12.5791 q = 99.0000; (p1 = 0.0756) ω = 2.7290 |
MAT1-2-1 | M0: one ratio | -2133.8605 | 4 | 11.1677 | 0.0247* | 0.3714 | ω = 0.37135 |
 | M3: discrete (κ = 3) | -2128.2767 |  |  |  | 0.4212 | p0 = 0.3531, ω0 = 0.2495; p1 = 0.6157, ω1 = 0.2496; p2 = 0.0312, ω2 = 5.7427 |
 | M1a: nearly neutral | -2129.6740 | 2 | 2.7948 | 0.2472 | 0.3528 | p0 = 0.6472, ω0 = 0; p1 = 0.3528, ω1 = 1 |
 | M2a: positive selection | -2128.2767 |  |  |  | 0.4212 | p0 = 0.9688, ω0 = 0.2496; p1 = 0, ω1 = 1; p2 = 0.0312, ω2 = 5.7428 |
 | M7: β | -2129.8169 | 2 | 3.0800 | 0.2144 | 0.3387 | p = 0.0170; q = 0.0321 |
 | M8: β & ω > 1 | -2128.2769 |  |  |  | 0.4212 | p0 = 0.9690 p = 33.0717 q = 99.0000; (p1 = 0.0310) ω = 5.7612 |