
Branch models

Site models

Branchsite models


ago1
Region 1 (726 nt)

oneratio:tworatio

P<0.0001
  
oneratio:freeratio

P<0.0001
  
tworatio:freeratio

P=0.6706

M7:M8

P<0.0001

MAof:MAoe

P=0.0285

ω
_{
ago1a
}
=0.0001

ω
_{
ago1b
}
=0.8621

4 sites with P>0.95

52 sites with P>0.95

ago1
Region 2 (909 nt)

oneratio:tworatio

P<0.0001
  
oneratio:freeratio

P<0.0001
  
tworatio:freeratio

P=0.0506

M7:M8

P<0.0001

MAof:MAoe

P=0.0218

ω
_{
ago1a
}
=0.0001

ω
_{
ago1b
}
=0.6236

5 sites with P>0.95

74 sites with P>0.95

ago1
Region 3 (276 nt)

oneratio:tworatio

P<0.0001
  
oneratio:freeratio

P<0.0001
  
tworatio:freeratio

P=0.4675

M7:M8

P=0.9802

MAof:MAoe

P=1

ω
_{
ago1a
}
=0.0039

ω
_{
ago1b
}
=0.2476

No positively selected sites

No positively selected sites

dcr1
(957 nt)

oneratio:tworatio

P=0.0002
  
oneratio:freeratio

P=0.0515
  
tworatio:freeratio

P=0.6424

M7:M8

P=0.4677

MAof:MAoe

P=1

ω
_{
dcr1/1a
}
=0.1247

ω
_{
dcr1b
}
=0.3577

No positively selected sites

No positively selected sites

 For branch models, the best overall model is highlighted (tworatio model for all the alignments) with its corresponding ω values. For site and branchsite models, the best model is highlighted as well as the number of positively selected sites when relevant. MAof: model MA with omega fixed to 1; MAoe: model MA with omega estimated. See text for further explanations about the models.