From: Hidden genetic diversity in the green alga Spirogyra (Zygnematophyceae, Streptophyta)
 | 1. | 2. | 3. | 4. | 5. | 6. |
---|---|---|---|---|---|---|
No. Taxa included | 33 | 20 | 55 | 13 | 17 | 3 |
Model | TrN+I+G | GTR+I+G | GTR+I+G | GTR+I+G | GTR+I+G | TrN+I+G |
-lnL | 10368.3486 | 6458.2769 | 7311.2354 | 5725.9985 | 5393.957 | 3020.6091 |
I | 0.4608 | 0.5560 | 0.6009 | 0.5228 | 0.5774 | 0.8131 |
G | 0.6376 | 0.7144 | 0.6856 | 0.5791 | 0.6728 | - |
Base frequencies | Â | Â | Â | Â | Â | Â |
A | 0.2545 | 0.2598 | 0.2338 | 0.2436 | 0.2595 | equal rates |
C | 0.2280 | 0.2067 | 0.2439 | 0.2354 | 0.2077 | Â |
G | 0.2665 | 0.2657 | 0.2871 | 0.2808 | 0.2651 | Â |
T | 0.2510 | 0.2678 | 0.2351 | 0.2403 | 0.2677 | Â |
G-C | 0.4945 | 0.4724 | 0.5310 | 0.5162 | 0.4728 | Â |
Rate matrix | Â | Â | Â | Â | Â | Â |
[A<->C] | 1.0000 | 1.0169 | 1.4341 | 1.7371 | 1.2473 | 1.0000 |
[A<->G] | 1.8721 | 1.9209 | 2.6641 | 2.7392 | 1.8624 | 2.1626 |
[A<->T] | 1.0000 | 1.2931 | 1.2357 | 1.3361 | 1.5619 | 1.0000 |
[C<->G] | 1.0000 | 0.7339 | 1.6993 | 1.8149 | 0.6646 | 1.0000 |
[C<->T] | 4.5252 | 5.9738 | 5.2526 | 5.9522 | 7.1560 | 5.2068 |
[G<->T] | 1.0000 | 1.0000 | 1.0000 | 1.0000 | 1.0000 | 1.0000 |
Character status | Â | Â | Â | Â | Â | Â |
aligned nt | 1720 | 1720 | 1645 | 1720 | 1720 | 1720 |
constant nt | 1136 | 1320 | 1258 | 1351 | 1393 | 1607 |
MP-informative | 479 | 256 | 330 | 269 | 177 | 0 |
MP-uninformative | 105 | 144 | 57 | 100 | 150 | 113 |