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Table 1 Bayesian estimates of DNA substitution model parameters for CYB, GHR, and their codon positions.

From: The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies

  CYT B GHR
  1 2 3 1 2 3
Sites 381 381 381 307 307 307
% A 36.0
33.7–38.4
28.2
25.6–31.0
  30.5 20.9 42.7 27.7 34.3 20.2
  26.4–34.6 17.1–25.0 38.5–46.4 23.2–32.3 29.5–39.2 16.5–24.2
% C 33.3
31.4–35.3
27.4
24.8–30.1
  28.8 25.7 33.6 21.8 30.4 30.9
  24.9–32.9 21.8–29.9 30.7–36.4 17.8–26.1 25.9–35.1 26.7–35.3
% G 9.2
7.8–10.6
23.0
20.5–25.1
  22.2 11.7 3.8 33.4 14.6 21.2
  18.4–26.1 8.8–14.9 3.1–4.7 28.7–38.4 10.9–18.4 17.4–25.3
% T 21.5
20.0–23.0
21.8
19.5–24.3
  18.5 41.6 19.9 17.1 20.7 27.7
  15.6–21.8 37.1–46.3 17.8–22.4 13.6–21.2 16.8–24.8 23.5–32.1
r AG 6.8
4.0–11.7
5.8
3.5–9.3
  4.3 1.0 22.1 7.3 17.9 13.5
  2.0–8.4 0.1–3.5 4.2–83.7 2.4–19.5 2.8–68.7 6.1–29.0
r CT 19.9
11.2–37.6
6.5
4.0–10.4
  37.2 40.2 19.0 6.2 20.2 5.4
  12.3–78.2 7.7–93.7 3.8–76.0 2.0–16.2 2.9–72.0 2.6–10.4
r AC 0.7
0.4–1.4
1.06
0.6–1.8
  0.6 0.3 1.1 2.5 2.7 1.0
  0.2–1.4 0–1.7 0.2–4.4 0.7–7.3 0.4–10.7 0.4–2.3
r AT 1.6
0.8–3.1
0.9
0.4–1.5
  1.8 0.4 2.2 2.2 2.9 0.8
  0.6–4.0 0.1–1.4 0.4–8.4 0.6–6.4 0.2–13.0 0.3–1.8
r CG 0.3
0.1–0.7
1.5
0.8–2.6
  0.2 14.4 2.4 2.1 6.4 1.3
  0–0.7 1.6–49.5 0.1–10.9 0.6–5.6 1.0–24.3 0.5–2.7
α (Γ 8 ) 0.17
0.16–0.19
0.48
0.41–0.53
  0.14 0.05 1.22 0.05 0.05 0.22
  0.12–0.17 0.05–0.06 0.96–1.54 0.05–0.05 0.05–0.06 0.18–0.27
  1. Number of sites, base composition (%A, C, G, and T), relative GTR substitution rate parameters (r AG, CT, AC, AT, CG, standardized to r GT = 1.0), and Gamma shape parameter (Γ) are given, with mean values on first sublines, and 95% credibility intervals, italicized on second sublines. Parameter estimates are also measured for each codon position, and are recapitulated in columns 1 (first), 2 (second), and 3 (third positions).