From: Evolutionary hierarchies of conserved blocks in 5'-noncoding sequences of dicot rbcS genes
Block | Definitiona | Associated motifsb |
---|---|---|
01 | GCGTCTGATTT | (?)ARR1 site |
02 | AAGGAGCCAAAAGC | (?)Dof site |
03 | AACCGATCAAGTGGAGA | (?)MYC site |
04 | AAAAATGAAAAACTTGTC | (?)GT-1 site |
05 | AACCATACACA | (?)MYB site |
06* | ATCACACATT | rbcS Box III* [32] |
07 | ATATCCTCTTCCTACCCCCAT | (?)PHR1 site; (?)MYB site |
08* | GATGAGATAAGA | rbcS I-box [31]; rbcS-CMA5 [28] |
09* | TTTGAGATAAGGA | rbcS I-box [31]; Manzara 5 [27] |
10* | ACACGTGGCA | rbcS G-box [31]; rbcS-CMA4/5 [28] |
11* | TCCTATTGGTGGCT | rbcS-CMA4 [28]; Manzara 4/8 [27] |
12* | GATAAGGCT | rbcS I-box [31]; rbcS-CMA4 [28] |
13 | TCAACACCTTTCCTT | (?)RAV1-A site; (?)Dof site |
14 | GGCACTTAGCTCCAATT | (?)CCAAT-box |
15 | TTTCCAACC | (?)MYB site |
16* | AGGGGTTAAA | Manzara 6 [27]; (?)GT1-core [32] |
17* | ATCTTGTGTGGTTAAT | rbcS Box II [32]; rbcS-CMA3 [28]; Manzara 8 [27] |
18 | AACGACGTTATCATGAAT | (?)ACGT element; (-)I-box [27] |
19* | GCAAAGTTT | rbcS 3AF-5 site [43]; rbcS-CMA3 [28] |
20* | TGTAATGTCA | Manzara 9 [49]; (?)(-)W-box |
21* | ATCATTTTCAC | rbcS Box III [32]; rbcS-CMA3 [28] |
22* | CCACATAA | rbcS-CMA2 [28]; Manzara 10 [49] |
23* | TCCAATGGTTA | rbcS-CMA2 [28]; Manzara 12–13 [49]; CAAT-box |
24 | ACCCTTTGATCATTA | (?)(-)Dof site |
25* | TCTAAGATGAGGTTTGCT | rbcS-CMA2 [28]; Manzara 15 [49] |
26 | TACCACAATTT | (?)CAAT-box |
27 | ACCATAATATTGGAA | rbcS-CMA1 [28]; (?)(-)CCAAT-box |
28* | TTGTGTCCGTTAGATG | Manzara 16 [49]; (?)MYB site |
29* | CCTTATCAT | rbcS-CMA1 [28]; LRE [49] |
30* | TATATAAA | rbcS-CMA1 [28]; TATA-box [49] |
31 | GAGGGGGA | (?)WT-1 site |
32 | ATGACAAAACCA | (?)W-box; (?)MYB site |
33* | AAGCTTTGCAA | rbcS Box V [90]; (?)(-)Dof site |
34 | GCAATAACCCTCTT | (?)CAAT-box |
35 | AAGAAGAAGA | - |
36 | TTTTCAGCA | - |