From: Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates
Functional Categories | COGs | KT99 | tot | p-value | SS9 | tot | p-value |
---|---|---|---|---|---|---|---|
Energy production and conversion | C | 5 | 149 | 0.214 | 12 | 125 | 0.482 |
Cell cycle control, cell division, chromosome partitioning | D | 1 | 28 | 0.175 | 2 | 23 | 0.407 |
Amino acid transport and metabolism | E | 7 | 173 | 0.093 | 22 | 200 | 0.261 |
Nucleotide transport and metabolism | F | 4 | 48 | 0.009 | 10 | 60 | 0.032 |
Carbohydrate transport and metabolism | G | 1 | 50 | 0.396 | 9 | 91 | 0.424 |
Coenzyme transport and metabolism | H | 2 | 114 | 0.606 | 4 | 107 | 0.987 |
Lipid transport and metabolism | I | 0 | 82 | - | 6 | 65 | 0.476 |
Translation, ribosomal structure and biogenesis | J | 5 | 124 | 0.117 | 9 | 125 | 0.817 |
Transcription | K | 0 | 126 | - | 10 | 136 | 0.816 |
Replication, recombination and repair | L | 3 | 107 | 0.330 | 5 | 100 | 0.945 |
Cell wall/membrane/envelope biogenesis | M | 4 | 106 | 0.158 | 16 | 113 | 0.050 |
Cell motility | N | 1 | 73 | 0.596 | 9 | 75 | 0.210 |
Posttranslational modification, protein turnover, chaperones | O | 2 | 111 | 0.587 | 10 | 102 | 0.441 |
Inorganic ion transport and metabolism | P | 4 | 72 | 0.044 | 16 | 107 | 0.033 |
Secondary metabolites biosynthesis, transport and catabolism | Q | 0 | 34 | - | 1 | 28 | 0.786 |
General function prediction only | R | 4 | 209 | 0.683 | 29 | 217 | 0.035 |
Function unknown | S | 19 | 659 | 0.319 | 52 | 577 | 0.789 |
Signal transduction mechanisms | T | 0 | 105 | - | 11 | 116 | 0.494 |
Intracellular trafficking, secretion, and vesicular transport | U | 2 | 74 | 0.325 | 13 | 81 | 0.027 |
Defense mechanisms | V | 3 | 25 | 0.004 | 2 | 36 | 0.713 |
Total Orthologs | Â | 67 | 2469 | Â | 213 | 2484 | Â |