Table 1 Summary Illumina sequencing accessions and plastome assembly information of Trifolium species
From: Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)
Species (USDA seed accession) [Section] | NO trimmed reads (mean length) [SD*] | Plastome length (repetitive %) | GenBank accession | Herbarium voucher |
|---|---|---|---|---|
Medicago truncatula | NA | 124,033 nt | NC_003119 | NA |
Gaertn. (NA) [NA] | (1.46%) | |||
T. aureum Pollich (NA) | NA | 126,970 | NC_024035 | NA |
[Subg. Chronosemium] | (5.6%**) | |||
T. grandiflorum Schreb. (NA) | NA | 125,628 | NC_024034 | NA |
[Subg. Chronosemium] | (4.3%**) | |||
T. subterraneum L. | NA | 144,763 nt | NC_011828 | NA |
(NA) [Trichocephalum] | (20.71%) | |||
T. repens L. (NA) | NA | 132,120 | NC_024036 | NA |
[Trifoliastrum] | (20.7%**) | |||
Trifolium boisseri Guss. (PI 369022) | 20.5 × 106 | 125,741 nt | KJ788284* | Sveinsson 14–01 (UBC) |
[Subg. Chronosemium] | (95.02) [14.08] | (1.05%) | ||
T. strictum L. | 16.7 × 106 | 125,835 nt | KJ788292* | Sveinsson 14–02 (UBC) |
(PI 369147) [Paramesus] | (95.13) [13.98] | (0.71%) | ||
T. glanduliferum Boiss. (PI 296666) | 11.5 – 106 | 126,182 nt | KJ788285* | Sveinsson 14–03 (UBC) |
[Paramesus] | (95.16) [13.96] | (0.78%) | ||
T. lupinaster L. | 24.8 × 106 | 135,077 nt | KJ788287* | Sveinsson 14–04 (UBC) |
(PI 631632) [Lupinaster] | (94.77) [14.33] | (5.98%) | ||
T. meduseum Blanche | 18.9 × 106 | 140,380 nt | KJ788288* | Sveinsson 14–05 (UBC) |
ex Boiss. (PI 369049) [Trichocephalum] | (95.14) [14.01] | (12.83%) | ||
T. pratense L. cv. | 22.2 × 106 | NA | KJ788290* | Sveinsson 14–07 (UBC) |
Arlington (G 27569) [Trifolium] | (94.85) [14.29] | (NA) | ||
T. hybridum L. | 21.4 × 106 | 134,881 nt | KJ788286* | Sveinsson 14–08 (UBC) |
(PI 634109, as T. pallescens) [Vesicastrum] | (95.11) [14.04] | (7.86%) | ||
T. semipilosum | 29.1 × 106 | 138,242 nt | KJ788291* | Sveinsson 14-09(UBC) |
Fresen. (PI 262238) [Vesicastrum] | (94.80) [14.33] | (10.55%) | ||
T. occidentale Coombe | 18.6 × 106 | 133,806 nt | KJ788289* | Sveinsson 14–10 (UBC) |
(PI 641363) [Trifoliastrum] | (95.35) [13.80] | (4.64%) |