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Table 1 The RSCU values and used codon numbers in the gDNA and mtDNA of B. mori

From: Analysis of codon usage bias of mitochondrial genome in Bombyx moriand its relation to evolution

AA Codon RSCU/number AA Codon RSCU/number
gDNA mtDNA gDNA mtDNA
Phe TTT * 0.78/6894 1.92/1439 Tyr TAT * 0.78/6250 1.88/641
  TTC 1.22/10823 0.08/63   TAC 1.22/9918 0.12/42
Asn AAT * 0.90/9230 1.76/790 Cys TGT * 0.88/3929 1.76/790
  AAC 1.10/11200 0.24/108   TGC 1.12/5094 0.24/108
Lys AAA * 1.10/15283 1.84/414 Arg CGT 1.04/4399 0.72/58
  AAG 0.90/12759 0.16/37   CGC 1.14/4711 0.00/0
Leu TTA * 0.96/5885 5.22/1640   CGA 0.78/3153 1.26/97
  TTG 1.14/7124 0.36/114   CGG 0.60/2423 0.06/4
  CTT 0.84/5193 0.12/37   AGA 1.50/6325 3.90/301
  CTC 1.04/6570 0.00/0   AGG 0.96/4011 0.06/4
  CTA 0.66/3941 0.30/96 Ser TCT * 1.08/5718 2.70/378
  CTG 1.32/8268 0.00/3   TCC 1.022/5399 0.30/39
Pro CCT * 1.08/6283 1.80/165   TCA 1.08/5846 2.04/292
  CCC 0.88/5256 0.44/42   TCG 0.90/4969 0.00/2
  CCA 1.04/6110 1.68/155   AGT 0.84/4632 0.90/128
  CCG 1.00/5860 0.08/8   AGC 1.02/5618 0.06/9
Thr ACT 1.08/7037 1.40/163 Asp GAT * 0.94/11523 1.90/176
  ACC 1.00/6390 0.28/34   GAC 1.06/12971 0.10/9
  ACA * 1.12/7146 2.24/265 Glu GAA * 1.16/16217 1.80/216
  ACG 0.84/5350 0.08/8   GAG 0.84/11781 0.20/24
Val GTT * 1.04/7558 2.20/254 Gly GGT 1.24/9761 1.72/260
  GTC 1.04/7502 0.04/4   GGC 1.08/8443 0.16/22
  GTA 0.76/5588 1.72/195   GGA * 1.24/9636 1.80/275
  GTG 1.20/8735 0.04/5   GGG 0.44/3465 0.32/51
Ala GCT * 1.40/11368 2.64/226 Ile ATT 1.02/8391 1.77/1508
  GCC 1.08/8860 0.20/16   ATC 1.11/9321 0.09/80
  GCA 0.80/6556 1.12/97   ATA 0.87/7173 1.14/956
  GCG 0.72/6066 0.04/4 Trp TGG 1.00/5272 1.00/29
Met ATG 1.00/10544 1.00/94 Gln CAA 1.04/8409 1.76/168
  1. Note: The preferentially used codons base on RSCU values for gDNA and mtDNA are in bold and italics, respectively. Asterisk (*) refers to the high frequency codons in mtDNA.