Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis

Wysocki, William P; Clark, Lynn G; Attigala, Lakshmi; Ruiz-Sanchez, Eduardo; Duvall, Melvin R

doi:10.1186/s12862-015-0321-5

BMC Ecology and Evolution

Table 1 NCBI nucleotide database accession numbers and lengths of regions and subregions for plastomes analyzed in this study

From: Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis

Taxon	Tribe	Total length	LSC ^a	SSC ^b	IR ^c	Accession	Voucher
Acidosasa purpurea	Arundinarieae	139,697	83,273	12,834	21,795	NC015820	N/A
Arundinaria appalachiana	Arundinarieae	139,547	83,222	12,717	21,804	NC023934	N/A
Arundinaria gigantea	Arundinarieae	138,935	82,632	12,709	21,797	NC020341	N/A
Arundinaria tecta	Arundinarieae	139,499	83,161	12,730	21,804	NC023935	N/A
Ferrocalamus rimosivaginus	Arundinarieae	139,467	83,091	12,718	21,829	NC015831	N/A
Indocalamus longiauritus	Arundinarieae	139,668	83,273	12,811	21,792	NC015803	N/A
Phyllostachys edulis	Arundinarieae	139,679	83,213	12,870	21,798	NC015817	N/A
Phyllostachys nigra	Arundinarieae	139,839	83,234	12,879	21,863	NC015826	N/A
Phyllostachys propinqua	Arundinarieae	139,704	83,228	12,878	21,799	NC016699	N/A
Thamnocalamus spathiflorus	Arundinarieae	139,498	83,310	12,594	21,797	KJ871005	LC 1319 (ISC)
Bambusa arnhemica	Bambuseae	139,287	82,790	12,901	21,798	KJ870989	PMP 1846 (CAN)
Bambusa bambos	Bambuseae	142,772	79,972	12,868	24,966	KJ870988	BI 1
Bambusa emeiensis	Bambuseae	139,491	82,976	12,911	21,802	NC015830	N/A
Bambusa oldhamii	Bambuseae	139,347	82,889	12,878	21,790	NC012927	N/A
Chusquea liebmannii	Bambuseae	138,001	81,501	12,892	21,804	KJ871001	LC & LA 1710 (ISC)
Chusquea spectabilis	Bambuseae	136,848	80,743	12,671	21,717	KJ870990	XL & LC 919 (ISC)
Dendrocalamus latiflorus	Bambuseae	139,369	82,975	12,884	21,755	NC013088	N/A
Greslania sp.	Bambuseae	139,264	82,581	12,979	21,852	KJ870993	GM (MO)
Guadua weberbaueri	Bambuseae	135,320	82,803	12,929	19,794	KP793062	XL & MK 582 (TULV)
Hickelia madagascariensis	Bambuseae	138,276	81,925	12,743	21,804	KJ870994	SD 1349 (K)
Neololeba atra	Bambuseae	139,395	82,905	12,926	21,782	KJ870996	LC & JT 1663 (ISC)
Olmeca reflexa	Bambuseae	136,213	82,726	12,945	20,271	KJ870997	Francisco Botanical Garden 312 (GCR)
Otatea acuminata	Bambuseae	136,351	82,859	12,948	20,272	KJ871003	LC & WZ 1348 (ISC)
Buergersiochloa bambusoides	Olyreae	138,122	81,746	12,856	21,760	KJ871000	SD 1365 (Kew)
Cryptochloa strictiflora	Olyreae	134,332	80,554	12,766	20,506	JX235348	N/A
Diandrolyra sp.	Olyreae	137,469	81,752	13,259	21,229	KJ870991	LC 1301 (ISC)
Eremitis sp.	Olyreae	143,810	80,984	13,232	24,797	KJ870992	LC & WZ 1343 (ISC)
Lithachne pauciflora	Olyreae	135,385	79,465	13,676	21,122	KJ871002	LC 1297 (ISC)
Olyra latifolia	Olyreae	135,834	80,642	12,770	21,211	KF515509	N/A
Pariana radiciflora	Olyreae	139,650	81,847	13,221	22,291	KJ871004	LC & WZ 1344 (ISC)
Raddia brasiliensis	Olyreae	135,739	80,713	13,000	21,013	KJ870998	LC & LA 1713 (ISC)
Zizania aquatica	Oryzeae (Ehrhartoideae)	136,354	82,009	12,587	20,879	KJ870999	JS 20870 (CAN)
Lolium perenne	Poeae (Pooideae)	135,246	80,000	12,428	21,409	NC009950	N/A

^aLarge Single Copy Region.
^bShort Single Copy Region.
^cInverted Repeat Region.
LC, Lynn Clark; LA, Lakshmi Attigala; SD, Soejatmi Dransfield; WZ, Weiping Zhang; JS, Jeff Saarela; PMP, Paul Peterson; JT, Jimmy Triplett; BI, Bogor, Indonesia; GM, G. McPherson; MK, M. Kobayashi; XL, Ximena Londoño; GCR, Gilberto Cortés Rodríguez.

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ISSN: 2730-7182

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