Table 3 List of ABC-protein encoding genes significantly up-regulated in mycorrhiza-forming mycelium (MYC) as compared to free-living mycelium (FLM)
From: Diversity and evolution of ABC proteins in mycorrhiza-forming fungi
Species | Protein model | Subfamily | Gene name | Fold change | p-value | Mean FLM | Mean MYC |
|---|---|---|---|---|---|---|---|
Laccaria bicolor | 601729 | ABC-B (FL) | LacbiABCB2.1b | 6.08 | 0 | 1097 | 6671 |
| Â | 671922 | ABC-B (HT) | LacbiABCB6.1 | 36.94 | 1.82E-14 | 957 | 35334 |
| Â | 327599 | Ydr061w | LacbiABCI2.1a | 7.89 | 1.50E-05 | 328 | 2590 |
| Â | 298087 | Ydr061w | LacbiABCI2.1d | 5.90 | 0 | 504 | 2972 |
Oidiodendron maius | 101847 | ABC-A | OidmaABCA1.2 | 3.66 | 1.35E-05 | 5.5 | 20.1 |
| Â | 104750 | ABC-B (FL) | OidmaABCB2.3a | 3.60 | 3.02E-32 | 35.0 | 125.9 |
| Â | 101864 | ABC-C | OidmaABCC3.1 | 2.51 | 9.82E-05 | 14.5 | 36.5 |
| Â | 106945 | ABC-C | OidmaABCC5.1Â m | 14.29 | 1.49E-12 | 5.1 | 72.5 |
| Â | 173820 | ABC-C | OidmaABCC5.1n | 8.32 | 0.029 | 1.0 | 8.2 |
| Â | 102203 | ABC-C | OidmaABCC7.1a | 2.11 | 0.004 | 13.7 | 29.0 |
| Â | 119877 | ABC-G | OidmaABCG6.2a | 73.40 | 3.02E-20 | 0.5 | 33.9 |
| Â | 123273 | ABC-G | OidmaABCG6.2b | 15.31 | 6.58E-20 | 6.2 | 95.5 |
Sebacina vermispora | 326231 | ABC-B (HT) | SebveABCB6.1a | 2.63 | 5.24E-05 | 13.2 | 34.6 |
| Â | 19794 | ABC-B (HT) | SebveABCB6.1b | 2.42 | 9.07E-05 | 11.5 | 27.9 |
| Â | 127786 | ABC-B (HT) | SebveABCB6.3 | 6.44 | 8.34E-05 | 7.2 | 46.3 |
| Â | 116826 | ABC-C | SebveABCC3.2e | 2.06 | 0.002 | 13.6 | 28.1 |
| Â | 29919 | ABC-C | SebveABCC7.3 | 3.79 | 2.17E-13 | 12.8 | 48.7 |
| Â | 71362 | ABC-F | SebveABCF1.1 | 2.39 | 5.06E-06 | 66.3 | 158.9 |
| Â | 333124 | ABC-F | SebveABCF2.1 | 2.68 | 3.60E-13 | 26.6 | 71.2 |
| Â | 17618 | ABC-G | SebveABCG6.1 | 2.98 | 5.32E-06 | 35.4 | 105.7 |
| Â | 174708 | Ydr061w | SebveABCI2.1 | 2.87 | 1.08E-04 | 10.0 | 28.6 |
| Â | 69180 | Ydr061w | SebveABCI3.1 | 2.03 | 4.37E-04 | 39.1 | 79.5 |
Tulasnella calospora | 19492 | ABC-B (FL) | TulcaABCB2.1a | 2.11 | 2.91E-05 | 27.7 | 58.5 |
| Â | 207894 | ABC-B (FL) | TulcaABCB2.1d | 2.46 | 1.80E-04 | 32.4 | 79.6 |
| Â | 161653 | ABC-B (FL) | TulcaABCB2.1e | 2.43 | 0.001 | 18.4 | 44.8 |
| Â | 22503 | ABC-B (HT) | TulcaABCB6.1a | 2.13 | 0.014 | 7.4 | 15.8 |
| Â | 78312 | ABC-B (HT) | TulcaABCB6.1b | 3.75 | 6.96E-04 | 8.0 | 30.0 |
| Â | 229331 | ABC-B (HT) | TulcaABCB6.3b | 2.84 | 0 | 37.5 | 106.4 |
| Â | 3597 | ABC-C | TulcaABCC6.1 | 4.39 | 0.002 | 20.1 | 88.1 |
| Â | 22078 | ABC-C | TulcaABCC7.2 | 4.99 | 1.85E-04 | 4.4 | 22.1 |
| Â | 72157 | ABC-F | TulcaABCF5.1 | 58.44 | 0.021 | 5.2 | 302.4 |
| Â | 80372 | ABC-G | TulcaABCG4.1b | 5.72 | 5.80E-06 | 17.4 | 99.3 |
| Â | 69109 | Ydr061w | TulcaABCI2.1 | 4.67 | 4.32E-05 | 4.0 | 18.6 |
| Â | 243146 | Ydr061w | TulcaABCI3.1 | 3.56 | 4.77E-09 | 14.3 | 50.9 |
Suillus luteus | 17399 | ABC-A | SuiluABCA1.1 | 4.16 | 4.23E-10 | 10.5 | 43.7 |
| Â | 621910 | ABC-A | SuiluABCA1.1 | 3.51 | 5.79E-05 | 6.5 | 22.8 |
| Â | 797578 | ABC-B (FL) | SuiluABCB2.1a | 2.12 | 7.14E-08 | 34.6 | 73.4 |
| Â | 107869 | ABC-F | SuiluABCF3.1 | 2.28 | 1.08E-05 | 19.8 | 45.2 |
Paxillus involutus | 111294 | ABC-B (FL) | PaxinABCB2.1c | 4.21 | 5.22E-05 | 6.0 | 25.2 |
| Â | 80655 | ABC-G | PaxinABCG2.1e | 11.01 | 0.004 | 10.2 | 112.1 |
| Â | 117609 | ABC-G | PaxinABCG2.1f | 4.68 | 4.59E-07 | 7.5 | 35.0 |
Piloderma croceum | 99185 | ABC-B (FL) | PilcrABCB2.1e | 3.63 | 1.06E-46 | 52.2 | 189.1 |
| Â | 4675 | ABC-B (HT) | PilcrABCB6.2a | 3.20 | 1.61E-06 | 9.0 | 28.7 |
| Â | 603979 | ABC-G | PilcrABCG6.2 | 11.34 | 6.80E-07 | 1.2 | 13.3 |
Hebeloma cylindrosporum | 19666 | ABC-C | HebcyABCC7.2b | 5.61 | 1.09E-05 | 3.4 | 18.9 |
| Â | 449030 | ABC-D | HebcyABCD1.1 | 3.22 | 0.020 | 6.2 | 20.0 |
| Â | 448391 | ABC-G | HebcyABCG6.2 | 5.99 | 3.75E-04 | 9.9 | 59.4 |