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Table 1 Summary of the nucleotide polymorphisms and neutrality tests of fourteen loci for wild radish

From: Lineage isolation in the face of active gene flow in the coastal plant wild radish is reinforced by differentiated vernalisation responses

Locus Aligned size (bp) No. of seqs. Largest non-recombining blocks (bp) R m S θ w π N h H d Neutrality tests
D D* F*
PHYA 473 140 149 8 5 0.00608 0.01008 4 0.610 1.32690 1.00882 1.31890
PHYB 420 142 151 6 5 0.00599 0.01271 6 0.506 2.26059* −0.09887 0.81392
PHYC 480 134 236 2 6 0.00465 0.00669 7 0.635 0.94466 1.09653 1.23822
PHYE 378 144 260 2 4 0.00278 0.00654 4 0.583 2.53131* 0.91024 1.70217
TBL19 415 134 347 2 3 0.00179 0.00339 4 0.537 1.52497 0.80285 1.21693
TBL21 559 140 175 5 3 0.00311 0.00576 4 0.517 1.44525 −0.65975 0.01794
MYB29 441 140 441 0 5 0.00206 0.00527 4 0.658 3.16093** 1.00882 2.04191**
COL4 577 136 280 4 4 0.00325 0.00374 5 0.372 0.30524 −1.19153 −0.82014
COL5 357 140 135 6 4 0.00537 0.00361 4 0.459 −0.61567 −2.83513* −2.48960*
CHI 366 144 274 2 3 0.00198 0.00209 4 0.536 0.09504 −0.66570 −0.49647
VEL2 317 142 196 2 3 0.00277 0.00498 4 0.708 1.34849 0.79831 1.14817
LFY 235 142 235 0 11 0.00847 0.00281 5 0.494 −1.66219 −3.50335** −3.38634**
CRY2 406 132 242 5 9 0.00682 0.01042 5 0.696 1.26908 1.30095 1.53412
CRY3 332 132 112 3 2 0.00327 0.00760 3 0.441 1.93184 0.66462 1.24454
Mean 411 139 231 3.4 4.8 0.00417 0.00612 4.5 0.554 - - -
  1. R m estimate of minimum number of recombination events, S number of polymorphic sites, θ w Watterson’s estimator of θ per base pair, π nucleotide diversity, N h number of haplotypes, H d haplotype diversity, D Tajima’D and Fu & Li’s D* and F*
  2. Significant levels: *, 0.01 ≤ p < 0.05; **, p < 0.01