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Table 4 Pfam/Conserved domain analysis of the top expressed transcripts from each tissue

From: Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis

Tissue

TrID

GrID

JGI ID

Pfam/CD(s) a

Description

nematosomes

Nv270

M

200843

Myosin_tail_1, Cast, TPR_MLP1_2, Mplasa_alph_rch

golgi autoantigen B1

Nv46

N

239786

cadherin

uromodulin

Nv1832

C

N/A

Calponin homology (CH) domain, Spectrin repeat, SMC_prok_A, PRK02224

utrophin

Nv495

C

246793

reprolysin, pep_M12B_propeptide, ADAM_spacer1 super family, TSP_1, FN3, ZnMc super family, ADAM_CR super family

ADAMTS

Nv791

C

27059

ZnMc_adamalysin_II_like, reprolysin, pep_M12B_propeptide, F5_F8 type C, disintegrin, ADAM_CysRich, TSP_1, FReD super family, EB

hemicentin/thrombospondin

Nv126

C

242847

N/A

uncharacterized

Nv354

M

119733

Homeobox KN domain, PRK12323 Sox_C_TAD super family

Meis2 transcription factor

Nv111

N

200034

N/A

uromodulin

Nv1971

A

96874

FN3, TLD, MAM, F5_F8_typeC, Ion_trans_2

sidekick-2 (immunoglobulin)

Nv1874

M

21107

PKD channel, REJ, PLAT_polycystin, PKD, GPS, F5_F8_typeC, WSC, DUF4271 super family

cation channel

mesenteries

Nv2

M

39271

CstA, PLA2c

Phospholipase A2

Nv151

M

205229

PHA03307, DUF1943, VWD, Vitellogenin_N

vitellogenin precursor

Nv169

M

180912

CBM_14

chitin binding protein

Nv224

M

168629

GH18_chitolectin_chitotriosidase, Glyco_18, Retinal, PHA03307, DUF2237 super family

chitinase

Nv274

M

109239

ND2 super family, Tryp_SPc, SR

chymotrypsin

Nv174

M

105779

Atrophin-1, Tryp_SPc, ShKT

chymotrypsin

Nv158

N

246653

LDLa, UPF0104 super family, Tymo_45kd_70kd

uncharacterized membrane protein

Nv215

M

15302

ZnMc_MMP, PG_binding_1, ShKT, Peptidase_M10

matrix metalloprotease

Nv9181

M

246069

Mito_carr, PTZ00169

ADP,ATP carrier protein

Nv896

C

98917

ZnMc_astascin like, ShK toxin domain, astacin (Peptidase family M12A), prolyl 4-hydroxylase

matrix metalloprotease

tentacles

Nv302

C

N/A

DnaJ_zf, GPS, TIG, Glyco_hydro_17 super family, REJ

egg jelly receptor

Nv520

M

120496

PTKc, FN3, SEA, Ig_2, Pkinase_Tyr, IGc2

FGF receptor c

Nv146

M

90289

KBL_like, Preseq_ALAS super family, BioF

aminotransferase

Nv886

M

80526

Ig, Ig super family, Ig2_FGFR_like, Ig super family, I-set, IG_like, IG, IGc2

Immunoglobulin like activity

Nv94

C

114661

SOUL

heme-binding protein

Nv139

N

122916

Gal_lectin, FYDLN_acid super family

rhamnose binding lectin

Nv325

M

202708

YtcJ_like

aminohydrolase

Nv219

M

243257

Gln-synt_C, Gln-synt_N, PLN02284

glutamine synthetase

Nv326

N

208719

TSP1, WSC super family

hemicentin

Nv162

N

202441

DUF2457

uncharacterized

  1. a Protein family (Pfam) domains were identified from the EMBL-EBI database (http://pfam.xfam.org/) and conserved domains (CD) were identified from NCBI’s conserved domain database (http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi). TrID internal transcript ID from NvecRef32743 de novo assembly, GrID orthology group, N Nematostella-specific, A anthozoan-specific, C cnidarian-specific, M shared/metazoan, JGI ID protein ID from the JGI database (http://genome.jgi-psf.org/Nemve1/Nemve1.home.html)