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Table 5 Details of sequences used for this study

From: Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response

Ribotype Accession No. TcdA/TcdB Sequence Length Serogroup
001 DQ060625 DQ060626 DQ060627 AJ300676 +/+ A.A: 756 Nuc: 2,271 G
002 DQ060628 DQ060629 +/+ A.A: 726 Nuc: 2,181 A2
005 DQ060630 DQ060631 +/+ A.A: 610 Nuc: 1,833 A1
010 DQ060633 AF478571 −/− A.A: 767 Nuc: 2,304 D
012 DQ060634 DQ060635 AJ291709 +/+ A.A: 719 Nuc: 2,160 C
014 DQ060638 +/+ A.A: 732 Nuc: 2,199 H
016 AF478570 n/a A.A: 610 Nuc: 1,833 A1
017 DQ060640 AJ300677 −/+ A.A: 714 Nuc: 2,145 F
027 R20291 CD196 +/+ A.A: 758 Nuc: 2,277 Unknown
031 DQ060641 −/− A.A: 739 Nuc: 2,220 K
046 DQ060636 +/+ A.A: 719 Nuc: 2,160 C
054 DQ060632 +/+ A.A: 610 Nuc: 1,833 A1
066 DQ060639 −/− A.A: 732 Nuc: 2,199 A9
078 DQ060643 +/+ A.A: 726 Nuc: 2,181 Unknown
092 DQ060637 +/+ A.A: 719 Nuc: 2,160 Unknown
094 DQ060642 +/+ A.A: 739 Nuc: 2,220 Unknown
  1. The table shown lists all the ribotypes used in the dataset. GenBank accession numbers for the slpA gene of each ribotype are given. In certain cases, slpA sequences from different strains within the same ribotype were included to allow as robust as possible analyses. Ribotype, accession number, toxin production, sequence length and serogroup are all included