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Table 5 Details of sequences used for this study

From: Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response

Ribotype Accession No. TcdA/TcdB Sequence Length Serogroup
001 DQ060625 DQ060626 DQ060627 AJ300676 +/+ A.A: 756
Nuc: 2,271
G
002 DQ060628 DQ060629 +/+ A.A: 726
Nuc: 2,181
A2
005 DQ060630 DQ060631 +/+ A.A: 610
Nuc: 1,833
A1
010 DQ060633 AF478571 −/− A.A: 767
Nuc: 2,304
D
012 DQ060634 DQ060635 AJ291709 +/+ A.A: 719
Nuc: 2,160
C
014 DQ060638 +/+ A.A: 732
Nuc: 2,199
H
016 AF478570 n/a A.A: 610
Nuc: 1,833
A1
017 DQ060640 AJ300677 −/+ A.A: 714
Nuc: 2,145
F
027 R20291
CD196
+/+ A.A: 758
Nuc: 2,277
Unknown
031 DQ060641 −/− A.A: 739
Nuc: 2,220
K
046 DQ060636 +/+ A.A: 719
Nuc: 2,160
C
054 DQ060632 +/+ A.A: 610
Nuc: 1,833
A1
066 DQ060639 −/− A.A: 732
Nuc: 2,199
A9
078 DQ060643 +/+ A.A: 726
Nuc: 2,181
Unknown
092 DQ060637 +/+ A.A: 719
Nuc: 2,160
Unknown
094 DQ060642 +/+ A.A: 739
Nuc: 2,220
Unknown
  1. The table shown lists all the ribotypes used in the dataset. GenBank accession numbers for the slpA gene of each ribotype are given. In certain cases, slpA sequences from different strains within the same ribotype were included to allow as robust as possible analyses. Ribotype, accession number, toxin production, sequence length and serogroup are all included