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Fig. 6 | BMC Evolutionary Biology

Fig. 6

From: Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences

Fig. 6

Distribution of correlation coefficients of branch lengths between single gene-tree and the corresponding concatenated tree in different configurations on the VERTEBRATA dataset (a) and the MAMMALIA dataset (b). RAW: raw MSAs, BMGE: after BMGE with loose settings, TriamAl: after TrimAl in gappy-out configuration, PREQUAL: after PREQUAL, HMM: after HmmCleaner with default preset, HMM-L: after HmmCleaner with large preset, HMM Random: after removing the same number of residues per sequence as HmmCleaner would do but at random, HMM + BMGE: running BMGE after HmmCleaner, HMM + TrimAl: running TrimAl after HmmCleaner, MIN: after removing sequences with < 100 aa, HMM + MIN: combination of HMM then MIN. See Additional file 1: Table S2 for mean values

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BMC Ecology and Evolution

ISSN: 2730-7182

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