Table 2 The substitution models used in particular phylogenetic analyses. They were selected by PartitionFinder using BIC model selection, greedy search, linked branch length
Partitions | RAxML | MrBayes | BEAST | |
|---|---|---|---|---|
1 | CYTB_pos1 | GTR + I + G | GTR + I + G | GTR + I + G |
2 | CYTB_pos2 | GTR + I + G | HKY + I + G | HKY + I + G |
3 | CYTB_pos3 | GTR + I + G | GTR + I + G | GTR + I + G |
4 | IRBP_pos1, RAG1_pos2 | GTR + G | HKY + I | TrN + I |
5 | IRBP_pos2, RAG1_pos3 | GTR + G | HKY + G | TrN + G |
6 | IRBP_pos3, RAG1_pos1 | GTR + I + G | HKY + I + G | HKY + I + G |
7 | D-loop | GTR + I + G | GTR + I + G | GTR + I + G |