Skip to main content

Advertisement

Table 1 Summary of loci/amplicons sequenced

From: Immunogenetic response of the bananaquit in the face of malarial parasites

    GROUP
    UNI LA07 INF
    n = 90 (45 individuals) n = 82 (41 individuals) n = 26 (13 individuals)
   Total # Alleles # Alleles # Unique Alleles Amplicon Depth (# reads) Avg. Allele Depth # Alleles # Unique Alleles Amplicon Depth (# reads) Avg. Allele Depth # Alleles # Unique Alleles Amplicon Depth (# reads) Avg. Allele Depth
LOCUS TLR1A 7 4 0 3310 828 5 0 1711 342 5 2 2709 542
TLR2B 14 5 0 2467 493 7 2 2387 341 7 7 1465 209
TLR7 7 5 0 3216 643 5 0 3741 748 7 2 3695 528
MHC1-UAA-1 3 3 0 3816 1272 1 0 3442 3442 3 0 3616 1205
MHC1-UAA-2 4 2 0 4382 2191 4 0 3875 969 4 0 2794 699
  1. Loci/amplicons and their presumptive alleles by group (phred score > 20, amplicon depth > 1000, allele depth > 100, minor allele frequency = 4%). UNI Uninfected group, LA07 infection with LA07 strains (host specialist), INF various infection strains other than LA07