Fig. 4

Alignments of individual sequences in the amylase region. The alignment is shown for the extended region (chr3: 112,700,001–114,300,000), the annotation of the amylase copies plus the neighboring gene (Rnpc3) is provided on the top. The annotation gap was removed, its position is marked by the blue arrow head. The sequences were aligned to the mm10 reference sequence, differences are indicated by black marks. The trees on the bottom represent bootstrap consensus trees of 10 kb sections from the positions indicated by red boxes. All nodes have 100% bootstrap support. The outgroup was M. caroli, but the branch length for the outgroup was trimmed