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Phylogenetics and phylogeography

Section edited by Craig Moritz and Herve Philippe

This section considers studies in the phylogeny and phylogeography of organisms.

Page 2 of 10

  1. Content type: Research

    Debated aspects in speciation research concern the amount of gene flow between incipient species under secondary contact and the modes by which post-zygotic isolation accumulates. Secondary contact zones of al...

    Authors: Christophe Dufresnes, Petros Lymberakis, Panagiotis Kornilios, Romain Savary, Nicolas Perrin and Matthias Stöck

    Citation: BMC Evolutionary Biology 2018 18:67

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  2. Content type: Research article

    The family Phyllostomidae (Chiroptera) shows wide morphological, molecular and cytogenetic variation; many disagreements regarding its phylogeny and taxonomy remains to be resolved. In this study, we use chrom...

    Authors: Anderson José Baia Gomes, Cleusa Yoshiko Nagamachi, Luis Reginaldo Ribeiro Rodrigues, Malcolm Andrew Ferguson-Smith, Fengtang Yang, Patricia Caroline Mary O’Brien and Julio Cesar Pieczarka

    Citation: BMC Evolutionary Biology 2018 18:62

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  3. Content type: Research article

    Dengue virus type 3 genotype III (DENV3/III) is associated with increased number of severe infections when it emerged in the Americas and Asia. We had previously demonstrated that the DENV3/III was introduced ...

    Authors: Kim-Kee Tan, Nurul-Izzani Zulkifle, Syuhaida Sulaiman, Sui-Ping Pang, NurAsyura NorAmdan, NorAziyah MatRahim, Juraina Abd-Jamil, Meng-Hooi Shu, Nor Muhammad Mahadi and Sazaly AbuBakar

    Citation: BMC Evolutionary Biology 2018 18:58

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  4. Content type: Research article

    Volcanic and tectonic activities in conjunction with Quaternary climate are the main events that shaped the geographical distribution of genetic variation of many lineages. Poeciliopsis infans is the only poecili...

    Authors: Rosa Gabriela Beltrán-López, Omar Domínguez-Domínguez, Rodolfo Pérez-Rodríguez, Kyle Piller and Ignacio Doadrio

    Citation: BMC Evolutionary Biology 2018 18:56

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  5. Content type: Research article

    Cavefish populations belonging to the Mexican tetra species Astyanax mexicanus are outstanding models to study the tempo and mode of adaptation to a radical environmental change. They are currently assigned to tw...

    Authors: Julien Fumey, Hélène Hinaux, Céline Noirot, Claude Thermes, Sylvie Rétaux and Didier Casane

    Citation: BMC Evolutionary Biology 2018 18:43

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  6. Content type: Research article

    The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated o...

    Authors: Ehsan Kayal, Bastian Bentlage, M. Sabrina Pankey, Aki H. Ohdera, Monica Medina, David C. Plachetzki, Allen G. Collins and Joseph F. Ryan

    Citation: BMC Evolutionary Biology 2018 18:68

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  7. Content type: Research article

    Life history characteristics are considered important factors influencing the evolutionary processes of natural populations, including the patterns of population genetic structure of a species. The sister spec...

    Authors: Song Yi Baek, Ji Hyoun Kang, Seo Hee Jo, Ji Eun Jang, Seo Yeon Byeon, Ju-hyoun Wang, Hwang-Goo Lee, Jun-Kil Choi and Hyuk Je Lee

    Citation: BMC Evolutionary Biology 2018 18:52

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  8. Content type: Research article

    Recently, population genetic studies of Mediterranean marine species highlighted patterns of genetic divergence and phylogeographic breaks, due to the interplay between impacts of Pleistocene climate shifts an...

    Authors: Temim Deli, Evrim Kalkan, Selahattin Ünsal Karhan, Sonya Uzunova, Alireza Keikhosravi, Raşit Bilgin and Christoph D. Schubart

    Citation: BMC Evolutionary Biology 2018 18:53

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  9. Content type: Research article

    Non-human primates have long been identified to harbour different species of Plasmodium. Long-tailed macaques (Macaca fascicularis), in particular, are reservoirs for P. knowlesi, P. inui, P. cynomolgi, P. coatne...

    Authors: Thamayanthi Nada Raja, Ting Huey Hu, Ramlah Zainudin, Kim Sung Lee, Susan L. Perkins and Balbir Singh

    Citation: BMC Evolutionary Biology 2018 18:49

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  10. Content type: Research article

    South China encompasses complex and diverse landforms, giving rise to high biological diversity and endemism from the Hengduan Mountains to Taiwan Island. Many species are widely distributed across South China...

    Authors: Xue Lv, Jilong Cheng, Yang Meng, Yongbin Chang, Lin Xia, Zhixin Wen, Deyan Ge, Shaoying Liu and Qisen Yang

    Citation: BMC Evolutionary Biology 2018 18:50

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  11. Content type: Research article

    The economic value of ginseng in the global medicinal plant trade is estimated to be in excess of US$2.1 billion. At the same time, the evolutionary placement of ginseng (Panax ginseng) and the complex evolutiona...

    Authors: V. Manzanilla, A. Kool, L. Nguyen Nhat, H. Nong Van, H. Le Thi Thu and H. J. de Boer

    Citation: BMC Evolutionary Biology 2018 18:44

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  12. Content type: Research article

    The ants of the Formica genus are classical model species in evolutionary biology. In particular, Darwin used Formica as model species to better understand the evolution of slave-making, a parasitic behaviour whe...

    Authors: Jonathan Romiguier, Jonathan Rolland, Claire Morandin and Laurent Keller

    Citation: BMC Evolutionary Biology 2018 18:40

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  13. Content type: Research article

    Much evolutionary theory predicts that diversity arises via both adaptive radiation (diversification driven by selection against niche-overlap within communities) and divergence of geographically isolated popu...

    Authors: Isaac Winkler, Sonja J. Scheffer, Matthew L. Lewis, Kristina J. Ottens, Andrew P. Rasmussen, Géssica A. Gomes-Costa, Luz Maria Huerto Santillan, Marty A. Condon and Andrew A. Forbes

    Citation: BMC Evolutionary Biology 2018 18:30

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  14. Content type: Research article

    Mountains have not only provided refuge for species, but also offered dispersal corridors during the Neogene and Quaternary global climate changes. Compared with a plethora of studies on the refuge role of Chi...

    Authors: Shuang Tian, Yixuan Kou, Zhirong Zhang, Lin Yuan, Derong Li, Jordi López-Pujol, Dengmei Fan and Zhiyong Zhang

    Citation: BMC Evolutionary Biology 2018 18:20

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  15. Content type: Research article

    Life diversifies via adaptive radiation when natural selection drives the evolution of ecologically distinct species mediated by their access to novel niche space, or via non-adaptive radiation when new specie...

    Authors: Ashley M. Reaney, Mónica Saldarriaga-Córdoba and Daniel Pincheira-Donoso

    Citation: BMC Evolutionary Biology 2018 18:16

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  16. Content type: Research article

    The application of target capture with next-generation sequencing now enables phylogenomic analyses of rapidly radiating clades of species. But such analyses are complicated by extensive incomplete lineage sor...

    Authors: Jason G. Bragg, Sally Potter, Ana C. Afonso Silva, Conrad J. Hoskin, Benjamin Y. H. Bai and Craig Moritz

    Citation: BMC Evolutionary Biology 2018 18:15

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  17. Content type: Database

    The thousands of species of closely related cichlid fishes in the great lakes of East Africa are a powerful model for understanding speciation and the genetic basis of trait variation. Recently, the genomes of...

    Authors: Ajay Ramakrishnan Varadarajan, Rohini Mopuri, J. Todd Streelman and Patrick T. McGrath

    Citation: BMC Evolutionary Biology 2018 18:1

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  18. Content type: Research article

    Recent studies have begun to reveal the complex evolutionary and biogeographic histories of mainland anoles in Central America, but the origins and relationships of many taxa remain poorly understood. One such...

    Authors: Erich P. Hofmann and Josiah H. Townsend

    Citation: BMC Evolutionary Biology 2017 17:267

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  19. Content type: Research article

    A deep divergence of mitochondrial DNA is common in species delimitated by morphological traits. Several hypotheses can explain such variations, such as cryptic species, introgression, allopatric divergence an...

    Authors: Chuanyin Dai, Yan Hao, Yong He and Fumin Lei

    Citation: BMC Evolutionary Biology 2017 17:266

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  20. Content type: Research Article

    Invasive mosquito species are responsible for millions of vector-borne disease cases annually. The global invasive success of Aedes mosquitoes such as Aedes aegypti and Aedes albopictus has relied on the human tr...

    Authors: John Soghigian, Theodore G. Andreadis and Todd P. Livdahl

    Citation: BMC Evolutionary Biology 2017 17:262

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  21. Content type: Research article

    The underlying mechanisms and processes that prompt the colonisation of extreme environments, such as caves, constitute major research themes of evolutionary biology and biospeleology. The special adaptations ...

    Authors: Jorge L. Pérez-Moreno, Gergely Balázs, Blake Wilkins, Gábor Herczeg and Heather D. Bracken-Grissom

    Citation: BMC Evolutionary Biology 2017 17:247

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  22. Content type: Research article

    Long-term survival in isolated marginal seas of the China coast during the late Pleistocene ice ages is widely believed to be an important historical factor contributing to population genetic structure in coas...

    Authors: Jing-Jing Li, Zi-Min Hu, Zhong-Min Sun, Jian-Ting Yao, Fu-Li Liu, Pablo Fresia and De-Lin Duan

    Citation: BMC Evolutionary Biology 2017 17:246

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  23. Content type: Research Article

    The glacial-interglacial cycles in the Pleistocene caused repeated range expansion and contraction of species in several regions in the world. However, it remains uncertain whether such climate oscillations ha...

    Authors: Feng Dong, Chih-Ming Hung, Xin-Lei Li, Jian-Yun Gao, Qiang Zhang, Fei Wu, Fu-Min Lei, Shou-Hsien Li and Xiao-Jun Yang

    Citation: BMC Evolutionary Biology 2017 17:244

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  24. Content type: Research article

    The classification of closely related plants is not straightforward. These morphologically similar taxa frequently maintain their inter-hybridization potential and share ancestral polymorphisms as a consequenc...

    Authors: Ana Lúcia A. Segatto, Maikel Reck-Kortmann, Caroline Turchetto and Loreta B. Freitas

    Citation: BMC Evolutionary Biology 2017 17:234

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  25. Content type: Research article

    Debilitating skin infestations caused by the mite, Sarcoptes scabiei, have a profound impact on human and animal health globally. In Australia, this impact is evident across different segments of Australian socie...

    Authors: Tamieka A. Fraser, Renfu Shao, Nicholas M. Fountain-Jones, Michael Charleston, Alynn Martin, Pam Whiteley, Roz Holme, Scott Carver and Adam Polkinghorne

    Citation: BMC Evolutionary Biology 2017 17:233

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  26. Content type: Research article

    Due to their great species and ecological diversity as well as their capacity to produce hundreds of different toxins, cone snails are of interest to evolutionary biologists, pharmacologists and amateur natura...

    Authors: Samuel Abalde, Manuel J. Tenorio, Carlos M. L. Afonso, Juan E. Uribe, Ana M. Echeverry and Rafael Zardoya

    Citation: BMC Evolutionary Biology 2017 17:231

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  27. Content type: Research article

    The Neotropical Region is known for its biodiversity and ranks third in number of known termite species. However, biogeographic and phylogeographic information of termites of this region is limited compared to...

    Authors: Amanda de Faria Santos, Tiago Fernandes Carrijo, Eliana Marques Cancello and Adriana Coletto Morales-Corrêa e Castro

    Citation: BMC Evolutionary Biology 2017 17:230

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  28. Content type: Methodology article

    Primulina Hance is an emerging model for studying evolutionary divergence, adaptation and speciation of the karst flora. However, phylogenetic relationships within the genus have not b...

    Authors: Chao Feng, Meizhen Xu, Chen Feng, Eric J. B. von Wettberg and Ming Kang

    Citation: BMC Evolutionary Biology 2017 17:224

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  29. Content type: Research article

    A range of higher animal taxa are shared across various chemosynthesis-based ecosystems (CBEs), which demonstrates the evolutionary link between these habitats, but on a global scale the number of species inha...

    Authors: Mari H. Eilertsen, Jon A. Kongsrud, Tom Alvestad, Josefin Stiller, Greg W. Rouse and Hans T. Rapp

    Citation: BMC Evolutionary Biology 2017 17:222

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  30. Content type: Research article

    The impact of predator-prey interactions on the evolution of many marine invertebrates is poorly understood. Since barriers to genetic exchange are less obvious in the marine realm than in terrestrial or fresh...

    Authors: Jessica A. Goodheart, Adam L. Bazinet, Ángel Valdés, Allen G. Collins and Michael P. Cummings

    Citation: BMC Evolutionary Biology 2017 17:221

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  31. Content type: Research article

    Species with broad distributions frequently divide into multiple genetic forms and may therefore be viewed as “cryptic species”. Here, we used the mitochondrial cytochrome b (Cytb) and 12 nuclear DNA loci to inve...

    Authors: Weitao Chen, Zaixuan Zhong, Wei Dai, Qi Fan and Shunping He

    Citation: BMC Evolutionary Biology 2017 17:216

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  32. Content type: Research article

    This study aims to assess the role that Pleistocene refugia, rivers and local habitat conditions may have played in the evolutionary diversification of three central African duiker species (Cephalophus dorsalis, ...

    Authors: Stephan Ntie, Anne R. Davis, Katrin Hils, Patrick Mickala, Henri A. Thomassen, Katy Morgan, Hadrien Vanthomme, Mary K. Gonder and Nicola M. Anthony

    Citation: BMC Evolutionary Biology 2017 17:212

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  33. Content type: Research article

    Interspecific interactions have long been assumed to play an important role in diversification. Mutualistic interactions, such as nursery pollination mutualisms, have been proposed as good candidates for diver...

    Authors: Lillian Jennifer Rodriguez, Anthony Bain, Lien-Siang Chou, Lucie Conchou, Astrid Cruaud, Regielene Gonzales, Martine Hossaert-McKey, Jean-Yves Rasplus, Hsy-Yu Tzeng and Finn Kjellberg

    Citation: BMC Evolutionary Biology 2017 17:207

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  34. Content type: Research article

    The systematic positions of the extinct insect orders Hypoperlida, Miomoptera and Permopsocida were enigmatic and unstable for nearly a century. The recent studies based on new material, especially from the Ce...

    Authors: Jakub Prokop, Martina Pecharová, Romain Garrouste, Robert Beattie, Ioana C. Chintauan-Marquier and André Nel

    Citation: BMC Evolutionary Biology 2017 17:205

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  35. Content type: Research article

    The adaptive evolution of species response to environment are the key issues in molecular ecology and evolutionary biology. The direction of adaptive differentiation of species in regions lacking strong select...

    Authors: Cai-Yun Miao, Yong Li, Jie Yang and Run-Li Mao

    Citation: BMC Evolutionary Biology 2017 17:202

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  36. Content type: Research article

    Especially on islands closer to the mainland, such as the Canary Islands, different lineages that originated by multiple colonization events could have merged by hybridization, which then could have promoted r...

    Authors: M. Curto, P. Puppo, S. Kratschmer and H. Meimberg

    Citation: BMC Evolutionary Biology 2017 17:198

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  37. Content type: Research article

    The impacts of hybridization on the process of speciation are manifold, leading to distinct patterns across the genome. Genetic differentiation accumulates in certain genomic regions, while divergence is hampe...

    Authors: Jente Ottenburghs, Hendrik-Jan Megens, Robert H. S. Kraus, Pim van Hooft, Sipke E. van Wieren, Richard P. M. A. Crooijmans, Ronald C. Ydenberg, Martien A. M. Groenen and Herbert H. T. Prins

    Citation: BMC Evolutionary Biology 2017 17:201

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  38. Content type: Research article

    There is increasing recognition of the concordance between marine biogeographic and phylogeographic boundaries. However, it is still unclear how population-level divergence translates into species-level diverg...

    Authors: Ahmad Farhadi, Andrew G. Jeffs, Hamid Farahmand, Thankappan Sarasam Rejiniemon, Greg Smith and Shane D. Lavery

    Citation: BMC Evolutionary Biology 2017 17:195

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  39. Content type: Research article

    The Asimina-Disepalum clade (Annonaceae subfam. Annonoideae tribe Annoneae) includes a major Neotropical-Asian biogeographical disjunction. We evaluate whether this disjunction can be explained by the Eocene bore...

    Authors: Pui-Sze Li, Daniel C. Thomas and Richard M. K. Saunders

    Citation: BMC Evolutionary Biology 2017 17:188

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  40. Content type: Research article

    Molecular taxonomy studies and barcoding projects can provide rapid means of detecting cryptic diversity. Nevertheless, the use of molecular data for species delimitation should be undertaken with caution. Esp...

    Authors: Anja Palandačić, Alexander Naseka, David Ramler and Harald Ahnelt

    Citation: BMC Evolutionary Biology 2017 17:184

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  41. Content type: Research article

    Hybridization is observed in many eukaryotic lineages and can lead to the formation of polyploid species. The study of hybridization and polyploidization faces challenges both in data generation and in account...

    Authors: Olga K. Kamneva, John Syring, Aaron Liston and Noah A. Rosenberg

    Citation: BMC Evolutionary Biology 2017 17:180

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  42. Content type: Research article

    The p53 signalling pathway, which controls cell fate, has been extensively studied due to its prominent role in tumor development. The pathway includes the tumor supressor protein p53, its vertebrate paralogs ...

    Authors: Emma Åberg, Fulvio Saccoccia, Manfred Grabherr, Wai Ying Josefin Ore, Per Jemth and Greta Hultqvist

    Citation: BMC Evolutionary Biology 2017 17:177

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2017 Journal Metrics

  • Citation Impact
    3.027 - 2-year Impact Factor
    3.628 - 5-year Impact Factor
    1.16 - Source Normalized Impact per Paper (SNIP)
    1.656 - SCImago Journal Rank (SJR)

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