BMC Ecology and Evolution

Table 3 Haplotype, genotype and nucleotide diversity values in populations and groups for each gene

From: Schmidtea mediterraneaphylogeography: an old species surviving on a few Mediterranean islands?

		COI(699bp)					CYB(598bp)					N13(336bp)
	Population	N _T	h	S	H _D	π	N _T	h	S	H _D	π	N _T	N _HT	N _P	h	S	H _D	π	g	G _D
	BAR_MON	35	1	0	0	0	35	1	0	0	0	33	32	66	2	2	0.507	0.0030	2	0.061
W	MEN_GOR	19	1	0	0	0	19	1	0	0	0	19	1	38	2	1	0.053	0.0002	2	0.105
	MEN_MER	20	1	0	0	0	20	1	0	0	0	18	1	36	2	1	0.056	0.0002	2	0.111
	SAR_AST	14	1	0	0	0	13	1	0	0	0	13	2	26	5	6	0.406	0.0051	4	0.423
	SAR_VAL	20	2	1	0.189	0.0003	17	1	0	0	0	14	4	28	3	3	0.611	0.0046	4	0.736
C	SAR_CAR	13	2	1	0.513	0.0007	4	1	0	0	0	4	1	8	3	3	0.679	0.0049	3	0.833
	SAR_SIL	12	2	1	0.167	0.0002	12	2	1	0.409	0.0007	12	9	24	5	7	0.768	0.0103	5	0.833
	COR_CAN	11	1	0	0	0	10	2	1	0.200	0.0003	10	2	20	3	3	0.611	0.0046	3	0.689
	TUN_LEB	25	3	2	0.157	0.0002	18	2	1	0.111	0.0002	8	0	16	1	0	0	0	1	0
S	SIC_MAZ	28	1	0	0	0	27	2	1	0.271	0.0029	27	16	54	3	5	0.551	0.0060	5	0.715
	SIC_MAR	19	1	0	0	0	18	1	0	0	0	19	0	38	1	0	0	0	1	0
	WEST	74	1	0	0	0	74	2	1	0.400	0.0006	70	34	140	4	3	0.625	0.0022	5	0.548
	CENTRAL	70	4	3	0.509	0.0007	56	3	2	0.305	0.0005	53	18	106	7	7	0.682	0.0071	9	0.746
	SOUTHEAST	72	4	3	0.478	0.0007	63	5	9	0.509	0.0038	54	16	108	3	5	0.352	0.0037	5	0.534
	TOTAL	216	8	37	0.773	0.0223	193	10	28	0.803	0.0168	177	68	354	14	15	0.853	0.0081	19	0.865

N_T, number of sequences; N_HT, number of heterozygous individuals for N13; N_P, number of sequences after haplotype reconstruction; h, number of haplotypes; S, number of polymorphic sites; H_D, haplotype diversity; π, nucleotide diversity; g, number of genotypes; G_D, genotype diversity; W, west group; C, central group; S, southeast group.

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