Table 3 DIRS1-like retrotransposons detected among decapods.
| Â | Â | Degenerate Primers Combinations | |||||
|---|---|---|---|---|---|---|---|
Specimens | Environments and phylum | DD1/DD6 | GD1/DD6 | DD4/DD6 | DD1/rcDD4 | GD1/rcDD4 | GD1soft/rcDD4soft |
Rimicaris exoculata | hydrothermal shrimps | + | + | + | + | + | + |
Chorocaris chacei | hydrothermal shrimps | + | + | + | + | + | + |
Mirocaris fortunata | hydrothermal shrimps | + | + | + | + | + | + |
Alvinocaris markensis | hydrothermal shrimps | + | + | + | + | + | AmaAlvisoft |
Alvinocaris muricola | hydrothermal shrimps | + | + | + | + | + | + |
Alvinocaris stactophila | hydrothermal shrimps | + | + | + | + | + | + |
Segonzacia mesatlantica | hydrothermal crabs | na | na | na | Na | na | na |
Bythograea thermydron | hydrothermal crabs | na | na | na | Na | na | - |
Cyanagraea praedator | hydrothermal crabs | na | na | na | Na | na | na |
Munidopsis recta | hydrothermal galatheid crabs | Traces | Traces | na | Na | Ymur2 | Ymur3 |
Palaemon serratus | intertidal shrimps | na | na | na | Na | na | Ypase1 |
Crangon crangon | intertidal shrimps | na | na | na | Na | na | Ycran1 |
Xantho incisus | intertidal crabs | na | na | na | Na | na | Traces |
Xantho pilipes | intertidal crabs | na | na | na | Na | na | Ypili1-2 |
Maja squinado | intertidal crabs | na | na | na | Na | na | Ymaja1 |
Carcinus maenas | intertidal crabs | na | na | na | Na | na | na |
Necora puber | intertidal crabs | na | na | na | Na | na | na |
Agononida laurentae | seamount galatheid crabs | na | na | na | Na | na | Yago1 |
Eumunida annulosa | seamount galatheid crabs | na | na | na | Na | na | Yannu1 |
Eumunida sternomaculata | seamount galatheid crabs | na | na | na | Na | na | - |
Porcellana platycheles | intertidal porcelain crabs | na | na | na | Na | na | na |
Pisidia longicornis | intertidal porcelain crabs | na | na | na | Na | na | Traces |
Dardanus calidus | intertidal hermit crabs | na | na | na | Na | na | na |
Nephrops norvegicus | intertidal lobsters | na | na | na | Na | na | Ynno1 |
Homarus gammarus | intertidal lobsters | na | na | na | Na | na | Yhoga1 |