Table 3 Count genes occurring in parental genomes, F1-hybrid and F2-backcross genomes
From: Meiotic recombination in the offspring of Microbotryum hybrids and its impact on pathogenicity
MSLpar | MSApar | A1-MSLhyb | A2-MSAhyb | A2-MSAhyb | A1-MSAhyb | A1-MSAhyb | A2-MSLhyb | A2-MSLhyb | A2-MSLbc | A2-MSLbc | |
|---|---|---|---|---|---|---|---|---|---|---|---|
Secreted Proteins | 278a | 273 | 278a (248b/1c/29d) | 275 (75/145/55) | 276 (65/160/51) | 276 (2/242/32) | 269 (3/221/45) | 278 (244/0/34) | 278 (248/0/30) | 276 (92/141/43) | 275 (124/121/30) |
CAZymes | 236 | 231 | 236 (226/0/10) | 235 (76/124/35) | 233 (64/146/23) | 235 (3/219/13) | 229 (2/214/5) | 235 (227/0/8) | 235 (227/0/8) | 235 (84/128/23) | 234 (127/95/12) |
Sugar-Transporter | 64 | 63 | 64 (63/0/1) | 63 (17/38/8) | 64 (22/38/4) | 63 (0/62/1) | 63 (0/61/2) | 64 (62/0/2) | 64 (63/0/1) | 64 (20/41/23) | 64 (32/31/3) |
PFAM | |||||||||||
PF00067.15 Cytochrome P450 | 10 | 10 | 10 (10/0/0) | 10 (3/6/1) | 10 (2/8/0) | 10 (0/10/0) | 10 (0/10/0) | 10 (10/0/0) | 10 (10/0/0) | 10 (6/4/0) | 10 (8/2/0) |
PF01697.20 Glycosyltransferase family | 5 | 5 | 5 (5/0/0) | 5 (1/4/0) | 5 (1/4/0) | 5 (0/5/0) | 5 (0/5/0) | 5 (5/0/0) | 5 (4/0/1) | 5 (2/2/1) | 5 (4/1/0) |
PF06280.5 Fn3-like (DUF1034) | 10 | 10 | 10 (9/0/1) | 10 (3/7/0) | 10 (2/7/1) | 10 (0/9/1) | 10 (0/10/0) | 10 (9/0/1) | 10 (9/0/1) | 10 (2/5/3) | 10 (7/2/1) |
PF00646.26 F-box | 7 | 7 | 7 (7/0/0) | 7 (3/3/1) | 7 (1/5/1) | 7 (0/7/0) | 7 (0/7/0) | 7 (6/0/1) | 7 (7/0/0) | 7 (1/4/2) | 7 (4/2/1) |
PF03583.7 Secretory lipase | 7 | 6 | 7 (6//01) | 7 (1/4/2) | 7 (6/0/1) | 7 (1/4/2) | 6 (1/4/1) | 7 (6/0/1) | 7 (6/0/1) | 7 (6/0/1) | 7 (6/0/1) |
PF07690.9 MFS1 Major Facilitator Superfamily | 119 | 115 | 118 (114/0/4) | 117 (33/64/20) | 118 (37/73/8) | 115 (0/111/4) | 115 (1/109/5) | 116 (109/0/7) | 116 (113/0/3) | 116 (34/73/9) | 116 (55/55/6) |
PF01753.11 zf-MYND finger | 7 | 7 | 7 (7/0/0) | 7 (3/4/0) | 7 (0/7/0) | 7 (0/7/0) | 7 (0/7/0) | 7 (7/0/0) | 7 (7/0/0) | 7 (0/7/0) | 7 (1/6/0) |
PF00097.18 Zinc finger, C3HC4 type | 14 | 14 | 14 (14/0/0) | 14 (2/12/0) | 14 (4/10/0) | 14 (0/14/0) | 14 (0/14/0) | 14 (14/0/0) | 14 (14/0/0) | 14 (3/10/1) | 14 (5/9/0) |
PF00098.16 Zinc knuckle | 7 | 5 | 7 (7/0/0) | 7 (3/3/1) | 6 (0/4/2) | 6 (1/5/0) | 6 (1/5/0) | 7 (7/0/0) | 7 (7/0/0) | 7 (4/3/0) | 7 (6/0/1) |
PF07738.6 Sad1/UNC-like | 2 | 2 | 2 (0/0/2) | 2 (0/0/2) | 2 (0/0/2) | 2 (0/0/2) | 2 (0/0/2) | 2 (0/0/2) | 2 (0/0/2) | 2 (2/0) | 2 (0/2) |